Analysis of interatomic Contacts of Structural Units in PDB entry:
5L3T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L3T entry

There are 6 chains in PDB entry 5L3T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 254GLY 547
B
 MET 1TRP 455
C
 LYS 27GLN 89
D
 UNK 1UNK 17
E
 UNK 1UNK 24
F
 UNK 1UNK 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5L3T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
257 272Right-handed alpha
Helix 2
AA2
A
273 278Right-handed 310
Helix 3
AA3
A
279 297Right-handed alpha
Helix 4
AA4
A
301 325Right-handed alpha
Helix 5
AA5
A
331 355Right-handed alpha
Helix 6
AA6
A
361 373Right-handed alpha
Helix 7
AA7
A
376 385Right-handed alpha
Helix 8
AA8
A
387 392Right-handed alpha
Helix 9
AA9
A
393 407Right-handed alpha
Helix 10
AB1
A
425 434Right-handed alpha
Helix 11
AB2
A
439 447Right-handed alpha
Helix 12
AB3
A
449 463Right-handed alpha
Helix 13
AB4
A
474 482Right-handed alpha
Helix 14
AB5
A
485 496Right-handed alpha
Helix 15
AB6
A
508 511Right-handed 310
Helix 16
AB7
A
529 537Right-handed alpha
Helix 17
AB8
A
540 546Right-handed alpha
Helix 18
AB9
B
2 13Right-handed alpha
Helix 19
AC1
B
22 38Right-handed alpha
Helix 20
AC2
B
41 51Right-handed alpha
Helix 21
AC3
B
58 75Right-handed alpha
Helix 22
AC4
B
83 97Right-handed alpha
Helix 23
AC5
B
105 129Right-handed alpha
Helix 24
AC6
B
130 135Right-handed alpha
Helix 25
AC7
B
139 156Right-handed alpha
Helix 26
AC8
B
169 174Right-handed alpha
Helix 27
AC9
B
174 189Right-handed alpha
Helix 28
AD1
B
191 193Right-handed 310
Helix 29
AD2
B
194 201Right-handed alpha
Helix 30
AD3
B
201 206Right-handed alpha
Helix 31
AD4
B
210 214Right-handed 310
Helix 32
AD5
B
215 233Right-handed alpha
Helix 33
AD6
B
235 253Right-handed alpha
Helix 34
AD7
B
257 278Right-handed alpha
Helix 35
AD8
B
287 291Right-handed 310
Helix 36
AD9
B
292 309Right-handed alpha
Helix 37
AE1
B
310 321Right-handed alpha
Helix 38
AE2
B
321 328Right-handed alpha
Helix 39
AE3
B
330 356Right-handed alpha
Helix 40
AE4
B
365 377Right-handed alpha
Helix 41
AE5
B
399 410Right-handed alpha
Helix 42
AE6
B
431 436Right-handed alpha
Helix 43
AE7
B
438 447Right-handed alpha
Helix 44
AE8
C
28 32Right-handed alpha
Helix 45
AE9
C
71 88Right-handed alpha
Helix 46
AF1
D
2 17Right-handed alpha
Helix 47
AF2
E
2 24Right-handed alpha
Helix 48
AF3
F
2 11Right-handed alpha
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There are 2 sheets in PDB entry 5L3T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
505 506anti-parallel
Strand 3
A
500 501anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 364first strand
Strand 2
B
423 426anti-parallel
Strand 3
B
415 418anti-parallel
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