Analysis of interatomic Contacts of Structural Units in PDB entry:
5L3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L3V entry

There are 2 chains in PDB entry 5L3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3GLY 293
B
 LEU 2GLY 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5L3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 14Right-handed alpha
Helix 2
AA2
A
18 37Right-handed alpha
Helix 3
AA3
A
40 56Right-handed alpha
Helix 4
AA4
A
65 82Right-handed alpha
Helix 5
AA5
A
108 123Right-handed alpha
Helix 6
AA6
A
138 151Right-handed alpha
Helix 7
AA7
A
162 177Right-handed alpha
Helix 8
AA8
A
193 210Right-handed alpha
Helix 9
AA9
A
221 225Right-handed 310
Helix 10
AB1
A
226 237Right-handed alpha
Helix 11
AB2
A
252 263Right-handed alpha
Helix 12
AB3
A
283 293Right-handed alpha
Helix 13
AB4
B
3 15Right-handed alpha
Helix 14
AB5
B
18 37Right-handed alpha
Helix 15
AB6
B
40 56Right-handed alpha
Helix 16
AB7
B
65 82Right-handed alpha
Helix 17
AB8
B
108 123Right-handed alpha
Helix 18
AB9
B
138 150Right-handed alpha
Helix 19
AC1
B
162 177Right-handed alpha
Helix 20
AC2
B
191 193Right-handed 310
Helix 21
AC3
B
194 210Right-handed alpha
Helix 22
AC4
B
221 225Right-handed 310
Helix 23
AC5
B
226 237Right-handed alpha
Helix 24
AC6
B
252 263Right-handed alpha
Helix 25
AC7
B
283 293Right-handed alpha
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There are 2 sheets in PDB entry 5L3V. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
127 132parallel
Strand 3
A
181 186parallel
Strand 4
A
97 102parallel
Strand 5
A
213 219parallel
Strand 6
A
241 245parallel
Strand 7
A
266 271parallel
Strand 8
A
279 281anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 156first strand
Strand 2
B
127 132parallel
Strand 3
B
181 186parallel
Strand 4
B
97 102parallel
Strand 5
B
213 219parallel
Strand 6
B
241 245parallel
Strand 7
B
266 271parallel
Strand 8
B
279 281anti-parallel
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