Analysis of interatomic Contacts of Structural Units in PDB entry:
5L3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L3W entry

There is 1 chain in PDB entry 5L3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 72SER 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5L3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 80Right-handed alpha
Helix 2
AA2
A
81 87Right-handed 310
Helix 3
AA3
A
91 94Right-handed 310
Helix 4
AA4
A
95 109Right-handed alpha
Helix 5
AA5
A
112 129Right-handed alpha
Helix 6
AA6
A
134 156Right-handed alpha
Helix 7
AA7
A
161 168Right-handed alpha
Helix 8
AA8
A
185 200Right-handed alpha
Helix 9
AA9
A
213 227Right-handed alpha
Helix 10
AB1
A
239 254Right-handed alpha
Helix 11
AB2
A
270 285Right-handed alpha
Helix 12
AB3
A
297 312Right-handed alpha
Helix 13
AB4
A
321 325Right-handed 310
Helix 14
AB5
A
328 338Right-handed alpha
Helix 15
AB6
A
358 367Right-handed alpha
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There are 2 sheets in PDB entry 5L3W. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
131 132anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
204 208parallel
Strand 3
A
258 262parallel
Strand 4
A
174 179parallel
Strand 5
A
288 294parallel
Strand 6
A
316 320parallel
Strand 7
A
342 346parallel
Strand 8
A
354 356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il