Analysis of interatomic Contacts of Structural Units in PDB entry:
5L40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L40 entry

There is 1 chain in PDB entry 5L40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5L40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
52 54Right-handed 310
Helix 3
AA3
A
55 60Right-handed alpha
Helix 4
AA4
A
71 73Right-handed 310
Helix 5
AA5
A
74 86Right-handed alpha
Helix 6
AA6
A
95 100Right-handed 310
Helix 7
AA7
A
106 122Right-handed alpha
Helix 8
AA8
A
134 140Right-handed 310
Helix 9
AA9
A
141 148Right-handed alpha
Helix 10
AB1
A
164 178Right-handed alpha
Helix 11
AB2
A
196 208Right-handed alpha
Helix 12
AB3
A
217 227Right-handed alpha
Helix 13
AB4
A
230 244Right-handed alpha
Helix 14
AB5
A
253 260Right-handed alpha
Helix 15
AB6
A
265 273Right-handed alpha
Helix 16
AB7
A
274 278Right-handed 310
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There are 3 sheets in PDB entry 5L40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
27 31parallel
Strand 3
A
2 5parallel
Strand 4
A
63 69parallel
Strand 5
A
89 93parallel
Strand 6
A
125 131parallel
Strand 7
A
184 188parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
212 215parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
194 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il