Analysis of interatomic Contacts of Structural Units in PDB entry:
5L45


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L45 entry

There are 2 chains in PDB entry 5L45 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2PRO 279
B
 SER -1PRO 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 5L45. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
52 60Right-handed alpha
Helix 3
AA3
A
74 86Right-handed alpha
Helix 4
AA4
A
95 100Right-handed 310
Helix 5
AA5
A
102 105Right-handed 310
Helix 6
AA6
A
106 121Right-handed alpha
Helix 7
AA7
A
134 140Right-handed 310
Helix 8
AA8
A
141 148Right-handed alpha
Helix 9
AA9
A
164 178Right-handed alpha
Helix 10
AB1
A
196 208Right-handed alpha
Helix 11
AB2
A
217 227Right-handed alpha
Helix 12
AB3
A
230 245Right-handed alpha
Helix 13
AB4
A
253 260Right-handed alpha
Helix 14
AB5
A
265 273Right-handed alpha
Helix 15
AB6
A
274 278Right-handed 310
Helix 16
AB7
B
10 23Right-handed alpha
Helix 17
AB8
B
52 54Right-handed 310
Helix 18
AB9
B
55 60Right-handed alpha
Helix 19
AC1
B
71 73Right-handed 310
Helix 20
AC2
B
74 86Right-handed alpha
Helix 21
AC3
B
95 99Right-handed 310
Helix 22
AC4
B
106 123Right-handed alpha
Helix 23
AC5
B
134 140Right-handed 310
Helix 24
AC6
B
141 147Right-handed alpha
Helix 25
AC7
B
164 178Right-handed alpha
Helix 26
AC8
B
196 208Right-handed alpha
Helix 27
AC9
B
217 227Right-handed alpha
Helix 28
AD1
B
230 245Right-handed alpha
Helix 29
AD2
B
253 260Right-handed alpha
Helix 30
AD3
B
265 273Right-handed alpha
Helix 31
AD4
B
274 278Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5L45. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
27 31parallel
Strand 3
A
3 5parallel
Strand 4
A
65 69parallel
Strand 5
A
89 93parallel
Strand 6
A
125 131parallel
Strand 7
A
184 188parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
212 215parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
194 195anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 47first strand
Strand 2
B
27 31parallel
Strand 3
B
2 5parallel
Strand 4
B
63 69parallel
Strand 5
B
89 93parallel
Strand 6
B
125 131parallel
Strand 7
B
184 188parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
212 215parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
194 195anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il