Analysis of interatomic Contacts of Structural Units in PDB entry:
5L53


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L53 entry

There is 1 chain in PDB entry 5L53 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11CYS 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5L53. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 36Right-handed alpha
Helix 2
AA2
A
46 62Right-handed alpha
Helix 3
AA3
A
63 67Right-handed 310
Helix 4
AA4
A
78 93Right-handed alpha
Helix 5
AA5
A
116 131Right-handed alpha
Helix 6
AA6
A
149 161Right-handed alpha
Helix 7
AA7
A
161 176Right-handed alpha
Helix 8
AA8
A
188 196Right-handed 310
Helix 9
AA9
A
198 207Right-handed alpha
Helix 10
AB1
A
212 229Right-handed alpha
Helix 11
AB2
A
241 262Right-handed alpha
Helix 12
AB3
A
288 300Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5L53. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
39 44parallel
Strand 3
A
15 18parallel
Strand 4
A
98 101parallel
Strand 5
A
182 186parallel
Strand 6
A
266 271parallel
Strand 7
A
310 312parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
144 147anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il