Analysis of interatomic Contacts of Structural Units in PDB entry:
5L57


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L57 entry

There is 1 chain in PDB entry 5L57 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5L57. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
45 52Right-handed alpha
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
79 86Right-handed alpha
Helix 5
AA5
A
94 104Right-handed alpha
Helix 6
AA6
A
185 204Right-handed alpha
Helix 7
AA7
A
216 235Right-handed alpha
Helix 8
AA8
A
235 242Right-handed alpha
Helix 9
AA9
A
251 260Right-handed alpha
Helix 10
AB1
A
287 289Right-handed 310
Helix 11
AB2
A
312 321Right-handed alpha
Helix 12
AB3
A
329 348Right-handed alpha
Helix 13
AB4
A
349 369Right-handed alpha
Helix 14
AB5
A
373 382Right-handed alpha
Helix 15
AB6
A
383 386Right-handed 310
Helix 16
AB7
A
387 391Right-handed 310
Helix 17
AB8
A
393 413Right-handed alpha
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There are 2 sheets in PDB entry 5L57. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 43first strand
Strand 2
A
5 14parallel
Strand 3
A
69 72parallel
Strand 4
A
303 307parallel
Strand 5
A
291 296anti-parallel
Strand 6
A
106 111anti-parallel
Strand 7
A
128 132anti-parallel
Strand 8
A
265 269parallel
Strand 9
A
207 211parallel
Strand 10
A
246 250parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
177 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il