Analysis of interatomic Contacts of Structural Units in PDB entry:
5L59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L59 entry

There are 2 chains in PDB entry 5L59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 37	SER 1227
B	PRO 37	SER 1227

There are 34 helices in PDB entry 5L59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	230	237	Right-handed alpha
Helix 2	AA2	A	318	326	Right-handed alpha
Helix 3	AA3	A	360	375	Right-handed alpha
Helix 4	AA4	A	512	516	Right-handed 310
Helix 5	AA5	A	518	526	Right-handed alpha
Helix 6	AA6	A	535	537	Right-handed 310
Helix 7	AA7	A	541	545	Right-handed 310
Helix 8	AA8	A	557	561	Right-handed 310
Helix 9	AA9	A	619	628	Right-handed alpha
Helix 10	AB1	A	664	670	Right-handed alpha
Helix 11	AB2	A	687	691	Right-handed 310
Helix 12	AB3	A	693	695	Right-handed 310
Helix 13	AB4	A	700	704	Right-handed 310
Helix 14	AB5	A	813	818	Right-handed alpha
Helix 15	AB6	A	890	895	Right-handed alpha
Helix 16	AB7	A	1070	1074	Right-handed 310
Helix 17	AB8	A	1131	1135	Right-handed 310
Helix 18	AB9	B	230	237	Right-handed alpha
Helix 19	AC1	B	318	326	Right-handed alpha
Helix 20	AC2	B	360	375	Right-handed alpha
Helix 21	AC3	B	512	516	Right-handed 310
Helix 22	AC4	B	518	526	Right-handed alpha
Helix 23	AC5	B	535	537	Right-handed 310
Helix 24	AC6	B	541	545	Right-handed 310
Helix 25	AC7	B	557	561	Right-handed 310
Helix 26	AC8	B	619	628	Right-handed alpha
Helix 27	AC9	B	664	670	Right-handed alpha
Helix 28	AD1	B	687	691	Right-handed 310
Helix 29	AD2	B	693	695	Right-handed 310
Helix 30	AD3	B	700	704	Right-handed 310
Helix 31	AD4	B	813	818	Right-handed alpha
Helix 32	AD5	B	890	895	Right-handed alpha
Helix 33	AD6	B	1070	1074	Right-handed 310
Helix 34	AD7	B	1131	1135	Right-handed 310

There are 50 sheets in PDB entry 5L59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	504	509	anti-parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	484	490	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	54	first strand
Strand 2	A	61	65	anti-parallel
Strand 3	A	68	72	anti-parallel
Strand 4	A	78	83	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	107	109	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	124	126	anti-parallel
Strand 3	A	138	140	anti-parallel
Strand 4	A	146	148	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	182	186	anti-parallel
Strand 3	A	199	203	anti-parallel
Strand 4	A	226	227	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	250	first strand
Strand 2	A	253	260	anti-parallel
Strand 3	A	277	284	anti-parallel
Strand 4	A	294	301	anti-parallel
Strand 5	A	419	420	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	250	first strand
Strand 2	A	253	260	anti-parallel
Strand 3	A	277	284	anti-parallel
Strand 4	A	294	301	anti-parallel
Strand 5	A	306	316	anti-parallel
Strand 6	A	334	341	anti-parallel
Strand 7	A	353	359	anti-parallel
Strand 8	A	425	427	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	440	first strand
Strand 2	A	443	450	anti-parallel
Strand 3	A	454	459	anti-parallel
Strand 4	A	470	476	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	540	first strand
Strand 2	A	531	533	anti-parallel
Strand 3	A	554	555	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	566	first strand
Strand 2	A	579	585	anti-parallel
Strand 3	A	612	616	anti-parallel
Strand 4	A	607	609	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	572	first strand
Strand 2	A	648	657	parallel
Strand 3	A	633	642	anti-parallel
Strand 4	A	594	599	anti-parallel
Strand 5	A	602	605	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	685	first strand
Strand 2	A	676	678	anti-parallel
Strand 3	A	697	698	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	716	first strand
Strand 2	A	801	805	parallel
Strand 3	A	779	788	anti-parallel
Strand 4	A	740	745	anti-parallel
Strand 5	A	751	754	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	716	first strand
Strand 2	A	801	805	parallel
Strand 3	A	779	788	anti-parallel
Strand 4	A	792	793	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	726	first strand
Strand 2	A	762	768	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	834	835	first strand
Strand 2	A	828	829	anti-parallel
Strand 3	A	849	850	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	864	868	first strand
Strand 2	A	879	884	anti-parallel
Strand 3	A	917	922	anti-parallel
Strand 4	A	903	907	anti-parallel
Strand 5	A	899	900	anti-parallel
Strand 6	A	935	938	anti-parallel
Strand 7	A	947	949	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	871	873	first strand
Strand 2	A	954	957	parallel
Strand 3	A	932	933	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	960	964	first strand
Strand 2	A	976	982	anti-parallel
Strand 3	A	1008	1012	anti-parallel
Strand 4	A	1000	1004	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	968	970	first strand
Strand 2	A	1040	1043	parallel
Strand 3	A	1020	1022	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	997	998	first strand
Strand 2	A	990	994	anti-parallel
Strand 3	A	1024	1028	anti-parallel
Strand 4	A	1031	1033	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1047	1051	first strand
Strand 2	A	1063	1069	anti-parallel
Strand 3	A	1099	1103	anti-parallel
Strand 4	A	1086	1094	anti-parallel
Strand 5	A	1078	1083	anti-parallel
Strand 6	A	1123	1127	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1055	1057	first strand
Strand 2	A	1143	1145	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1167	1170	first strand
Strand 2	A	1203	1206	anti-parallel
Strand 3	A	1198	1199	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1193	1194	first strand
Strand 2	A	1186	1190	anti-parallel
Strand 3	A	1217	1221	anti-parallel
Strand 4	A	1225	1226	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	43	first strand
Strand 2	B	504	509	anti-parallel
Strand 3	B	496	501	anti-parallel
Strand 4	B	484	490	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	54	first strand
Strand 2	B	61	65	anti-parallel
Strand 3	B	68	72	anti-parallel
Strand 4	B	78	83	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	107	109	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	124	126	anti-parallel
Strand 3	B	138	140	anti-parallel
Strand 4	B	146	148	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	172	first strand
Strand 2	B	182	186	anti-parallel
Strand 3	B	199	203	anti-parallel
Strand 4	B	226	227	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	250	first strand
Strand 2	B	253	260	anti-parallel
Strand 3	B	277	284	anti-parallel
Strand 4	B	294	301	anti-parallel
Strand 5	B	419	420	parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	250	first strand
Strand 2	B	253	260	anti-parallel
Strand 3	B	277	284	anti-parallel
Strand 4	B	294	301	anti-parallel
Strand 5	B	306	316	anti-parallel
Strand 6	B	334	341	anti-parallel
Strand 7	B	353	359	anti-parallel
Strand 8	B	425	427	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	440	first strand
Strand 2	B	443	450	anti-parallel
Strand 3	B	454	459	anti-parallel
Strand 4	B	470	476	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	540	first strand
Strand 2	B	531	533	anti-parallel
Strand 3	B	554	555	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	566	first strand
Strand 2	B	579	585	anti-parallel
Strand 3	B	612	616	anti-parallel
Strand 4	B	607	609	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	572	first strand
Strand 2	B	648	657	parallel
Strand 3	B	633	642	anti-parallel
Strand 4	B	594	599	anti-parallel
Strand 5	B	602	605	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	685	first strand
Strand 2	B	676	678	anti-parallel
Strand 3	B	697	698	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	716	first strand
Strand 2	B	801	805	parallel
Strand 3	B	779	788	anti-parallel
Strand 4	B	740	745	anti-parallel
Strand 5	B	751	754	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	716	first strand
Strand 2	B	801	805	parallel
Strand 3	B	779	788	anti-parallel
Strand 4	B	792	793	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	721	726	first strand
Strand 2	B	762	768	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	834	835	first strand
Strand 2	B	828	829	anti-parallel
Strand 3	B	849	850	anti-parallel

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There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	864	868	first strand
Strand 2	B	879	884	anti-parallel
Strand 3	B	917	922	anti-parallel
Strand 4	B	903	907	anti-parallel
Strand 5	B	899	900	anti-parallel
Strand 6	B	935	938	anti-parallel
Strand 7	B	947	949	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	871	873	first strand
Strand 2	B	954	957	parallel
Strand 3	B	932	933	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	960	964	first strand
Strand 2	B	976	982	anti-parallel
Strand 3	B	1008	1012	anti-parallel
Strand 4	B	1000	1004	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	968	970	first strand
Strand 2	B	1040	1043	parallel
Strand 3	B	1020	1022	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	997	998	first strand
Strand 2	B	990	994	anti-parallel
Strand 3	B	1024	1028	anti-parallel
Strand 4	B	1031	1033	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1047	1051	first strand
Strand 2	B	1063	1069	anti-parallel
Strand 3	B	1099	1103	anti-parallel
Strand 4	B	1086	1094	anti-parallel
Strand 5	B	1078	1083	anti-parallel
Strand 6	B	1123	1127	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1055	1057	first strand
Strand 2	B	1143	1145	parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1167	1170	first strand
Strand 2	B	1203	1206	anti-parallel
Strand 3	B	1198	1199	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1193	1194	first strand
Strand 2	B	1186	1190	anti-parallel
Strand 3	B	1217	1221	anti-parallel
Strand 4	B	1225	1226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L59

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L59