Analysis of interatomic Contacts of Structural Units in PDB entry:
5L5L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L5L entry

There are 2 chains in PDB entry 5L5L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 37	VAL 1036
B	PRO 37	MET 951

There are 23 helices in PDB entry 5L5L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	229	236	Right-handed alpha
Helix 2	AA2	A	317	326	Right-handed alpha
Helix 3	AA3	A	359	374	Right-handed alpha
Helix 4	AA4	A	508	512	Right-handed 310
Helix 5	AA5	A	514	522	Right-handed alpha
Helix 6	AA6	A	553	557	Right-handed 310
Helix 7	AA7	A	618	624	Right-handed alpha
Helix 8	AA8	A	660	667	Right-handed alpha
Helix 9	AA9	A	689	691	Right-handed 310
Helix 10	AB1	A	809	816	Right-handed alpha
Helix 11	AB2	A	885	890	Right-handed alpha
Helix 12	AB3	B	229	236	Right-handed alpha
Helix 13	AB4	B	317	326	Right-handed alpha
Helix 14	AB5	B	359	374	Right-handed alpha
Helix 15	AB6	B	508	512	Right-handed 310
Helix 16	AB7	B	514	522	Right-handed alpha
Helix 17	AB8	B	553	557	Right-handed 310
Helix 18	AB9	B	618	624	Right-handed alpha
Helix 19	AC1	B	660	667	Right-handed alpha
Helix 20	AC2	B	689	691	Right-handed 310
Helix 21	AC3	B	696	700	Right-handed 310
Helix 22	AC4	B	809	816	Right-handed alpha
Helix 23	AC5	B	885	890	Right-handed alpha

There are 37 sheets in PDB entry 5L5L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	500	505	anti-parallel
Strand 3	A	492	497	anti-parallel
Strand 4	A	480	486	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	62	66	anti-parallel
Strand 3	A	69	73	anti-parallel
Strand 4	A	79	84	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	108	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	125	129	anti-parallel
Strand 3	A	137	141	anti-parallel
Strand 4	A	147	149	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	172	first strand
Strand 2	A	182	185	anti-parallel
Strand 3	A	198	201	anti-parallel
Strand 4	A	225	226	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	249	first strand
Strand 2	A	252	259	anti-parallel
Strand 3	A	276	283	anti-parallel
Strand 4	A	293	301	anti-parallel
Strand 5	A	418	419	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	249	first strand
Strand 2	A	252	259	anti-parallel
Strand 3	A	276	283	anti-parallel
Strand 4	A	293	301	anti-parallel
Strand 5	A	304	315	anti-parallel
Strand 6	A	333	340	anti-parallel
Strand 7	A	352	358	anti-parallel
Strand 8	A	421	426	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	439	first strand
Strand 2	A	442	449	anti-parallel
Strand 3	A	454	458	anti-parallel
Strand 4	A	467	471	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	536	first strand
Strand 2	A	527	529	anti-parallel
Strand 3	A	550	551	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	562	first strand
Strand 2	A	575	581	anti-parallel
Strand 3	A	608	612	anti-parallel
Strand 4	A	603	605	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	568	first strand
Strand 2	A	644	653	parallel
Strand 3	A	629	638	anti-parallel
Strand 4	A	590	595	anti-parallel
Strand 5	A	598	601	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	681	first strand
Strand 2	A	672	674	anti-parallel
Strand 3	A	693	694	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	704	first strand
Strand 2	A	717	724	anti-parallel
Strand 3	A	758	764	anti-parallel
Strand 4	A	747	755	anti-parallel
Strand 5	A	736	741	anti-parallel
Strand 6	A	775	784	anti-parallel
Strand 7	A	797	801	anti-parallel
Strand 8	A	709	712	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	704	first strand
Strand 2	A	717	724	anti-parallel
Strand 3	A	758	764	anti-parallel
Strand 4	A	747	755	anti-parallel
Strand 5	A	736	741	anti-parallel
Strand 6	A	775	784	anti-parallel
Strand 7	A	788	789	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	825	first strand
Strand 2	A	830	831	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	863	first strand
Strand 2	A	874	879	anti-parallel
Strand 3	A	912	917	anti-parallel
Strand 4	A	898	902	anti-parallel
Strand 5	A	894	895	anti-parallel
Strand 6	A	929	932	anti-parallel
Strand 7	A	941	943	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	866	868	first strand
Strand 2	A	948	951	parallel
Strand 3	A	926	927	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	954	958	first strand
Strand 2	A	970	976	anti-parallel
Strand 3	A	1002	1006	anti-parallel
Strand 4	A	994	998	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	962	964	first strand
Strand 2	A	1034	1036	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	992	first strand
Strand 2	A	985	988	anti-parallel
Strand 3	A	1017	1022	anti-parallel
Strand 4	A	1025	1032	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	43	first strand
Strand 2	B	500	505	anti-parallel
Strand 3	B	492	497	anti-parallel
Strand 4	B	480	486	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	62	66	anti-parallel
Strand 3	B	69	73	anti-parallel
Strand 4	B	79	84	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	108	110	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	125	129	anti-parallel
Strand 3	B	137	141	anti-parallel
Strand 4	B	147	149	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	182	185	anti-parallel
Strand 3	B	198	201	anti-parallel
Strand 4	B	225	226	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	249	first strand
Strand 2	B	252	259	anti-parallel
Strand 3	B	276	283	anti-parallel
Strand 4	B	293	301	anti-parallel
Strand 5	B	418	419	parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	249	first strand
Strand 2	B	252	259	anti-parallel
Strand 3	B	276	283	anti-parallel
Strand 4	B	293	301	anti-parallel
Strand 5	B	304	315	anti-parallel
Strand 6	B	333	340	anti-parallel
Strand 7	B	352	358	anti-parallel
Strand 8	B	421	426	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	439	first strand
Strand 2	B	442	449	anti-parallel
Strand 3	B	454	458	anti-parallel
Strand 4	B	467	471	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	536	first strand
Strand 2	B	527	529	anti-parallel
Strand 3	B	550	551	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	562	first strand
Strand 2	B	575	581	anti-parallel
Strand 3	B	608	612	anti-parallel
Strand 4	B	603	605	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	568	first strand
Strand 2	B	644	653	parallel
Strand 3	B	629	638	anti-parallel
Strand 4	B	590	595	anti-parallel
Strand 5	B	598	601	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	681	first strand
Strand 2	B	672	674	anti-parallel
Strand 3	B	693	694	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	704	first strand
Strand 2	B	717	724	anti-parallel
Strand 3	B	758	764	anti-parallel
Strand 4	B	747	755	anti-parallel
Strand 5	B	736	741	anti-parallel
Strand 6	B	775	784	anti-parallel
Strand 7	B	797	801	anti-parallel
Strand 8	B	709	712	parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	704	first strand
Strand 2	B	717	724	anti-parallel
Strand 3	B	758	764	anti-parallel
Strand 4	B	747	755	anti-parallel
Strand 5	B	736	741	anti-parallel
Strand 6	B	775	784	anti-parallel
Strand 7	B	788	789	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	824	825	first strand
Strand 2	B	830	831	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	859	863	first strand
Strand 2	B	874	879	anti-parallel
Strand 3	B	912	917	anti-parallel
Strand 4	B	898	902	anti-parallel
Strand 5	B	894	895	anti-parallel
Strand 6	B	929	932	anti-parallel
Strand 7	B	941	943	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	866	868	first strand
Strand 2	B	948	951	parallel
Strand 3	B	926	927	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L5L

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L5L