Analysis of interatomic Contacts of Structural Units in PDB entry:
5L5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L5M entry

There is 1 chain in PDB entry 5L5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 37MET 951
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5L5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
229 236Right-handed alpha
Helix 2
AA2
A
317 326Right-handed alpha
Helix 3
AA3
A
359 374Right-handed alpha
Helix 4
AA4
A
508 512Right-handed 310
Helix 5
AA5
A
514 522Right-handed alpha
Helix 6
AA6
A
553 557Right-handed 310
Helix 7
AA7
A
618 624Right-handed alpha
Helix 8
AA8
A
660 667Right-handed alpha
Helix 9
AA9
A
689 691Right-handed 310
Helix 10
AB1
A
696 700Right-handed 310
Helix 11
AB2
A
809 816Right-handed alpha
Helix 12
AB3
A
885 890Right-handed alpha
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There are 17 sheets in PDB entry 5L5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
500 505anti-parallel
Strand 3
A
492 497anti-parallel
Strand 4
A
480 486anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
62 66anti-parallel
Strand 3
A
69 73anti-parallel
Strand 4
A
79 84anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
108 110anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
125 129anti-parallel
Strand 3
A
137 141anti-parallel
Strand 4
A
147 149anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
182 185anti-parallel
Strand 3
A
198 201anti-parallel
Strand 4
A
225 226anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 249first strand
Strand 2
A
252 259anti-parallel
Strand 3
A
276 283anti-parallel
Strand 4
A
293 301anti-parallel
Strand 5
A
418 419parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 249first strand
Strand 2
A
252 259anti-parallel
Strand 3
A
276 283anti-parallel
Strand 4
A
293 301anti-parallel
Strand 5
A
304 315anti-parallel
Strand 6
A
333 340anti-parallel
Strand 7
A
352 358anti-parallel
Strand 8
A
421 426anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 439first strand
Strand 2
A
442 449anti-parallel
Strand 3
A
454 458anti-parallel
Strand 4
A
467 471anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 536first strand
Strand 2
A
527 529anti-parallel
Strand 3
A
550 551anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 562first strand
Strand 2
A
575 581anti-parallel
Strand 3
A
608 612anti-parallel
Strand 4
A
603 605anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 568first strand
Strand 2
A
644 653parallel
Strand 3
A
629 638anti-parallel
Strand 4
A
590 595anti-parallel
Strand 5
A
598 601anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
679 681first strand
Strand 2
A
672 674anti-parallel
Strand 3
A
693 694anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
702 704first strand
Strand 2
A
717 724anti-parallel
Strand 3
A
758 764anti-parallel
Strand 4
A
747 755anti-parallel
Strand 5
A
736 741anti-parallel
Strand 6
A
775 784anti-parallel
Strand 7
A
797 801anti-parallel
Strand 8
A
709 712parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
702 704first strand
Strand 2
A
717 724anti-parallel
Strand 3
A
758 764anti-parallel
Strand 4
A
747 755anti-parallel
Strand 5
A
736 741anti-parallel
Strand 6
A
775 784anti-parallel
Strand 7
A
788 789anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 825first strand
Strand 2
A
830 831anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
859 863first strand
Strand 2
A
874 879anti-parallel
Strand 3
A
912 917anti-parallel
Strand 4
A
898 902anti-parallel
Strand 5
A
894 895anti-parallel
Strand 6
A
929 932anti-parallel
Strand 7
A
941 943anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
866 868first strand
Strand 2
A
948 951parallel
Strand 3
A
926 927anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il