Analysis of interatomic Contacts of Structural Units in PDB entry:
5L6M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L6M entry

There are 12 chains in PDB entry 5L6M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ILE 67
B	ALA 2	TRP 128
C	ALA 2	TRP 128
D	ALA 2	LEU 72
E	HIS -1	SER 64
F	ALA 2	TRP 128
G	ALA 2	TRP 128
H	HIS 1	GLU 70
I	HIS -1	GLU 66
J	ALA 2	TRP 128
K	ALA 2	TRP 128
L	HIS 1	GLU 70

There are 56 helices in PDB entry 5L6M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	59	Right-handed alpha
Helix 2	AA2	B	6	16	Right-handed alpha
Helix 3	AA3	B	17	26	Right-handed alpha
Helix 4	AA4	B	35	46	Right-handed alpha
Helix 5	AA5	B	47	50	Right-handed 310
Helix 6	AA6	B	51	66	Right-handed alpha
Helix 7	AA7	B	72	87	Right-handed alpha
Helix 8	AA8	B	92	105	Right-handed alpha
Helix 9	AA9	B	113	118	Right-handed 310
Helix 10	AB1	C	6	15	Right-handed alpha
Helix 11	AB2	C	17	26	Right-handed alpha
Helix 12	AB3	C	35	44	Right-handed alpha
Helix 13	AB4	C	48	50	Right-handed 310
Helix 14	AB5	C	51	66	Right-handed alpha
Helix 15	AB6	C	72	87	Right-handed alpha
Helix 16	AB7	C	92	105	Right-handed alpha
Helix 17	AB8	C	113	118	Right-handed 310
Helix 18	AB9	D	48	59	Right-handed alpha
Helix 19	AC1	D	68	72	Right-handed 310
Helix 20	AC2	E	20	24	Right-handed 310
Helix 21	AC3	F	6	15	Right-handed alpha
Helix 22	AC4	F	17	27	Right-handed alpha
Helix 23	AC5	F	35	46	Right-handed alpha
Helix 24	AC6	F	48	66	Right-handed alpha
Helix 25	AC7	F	72	87	Right-handed alpha
Helix 26	AC8	F	92	105	Right-handed alpha
Helix 27	AC9	F	113	118	Right-handed 310
Helix 28	AD1	G	6	15	Right-handed alpha
Helix 29	AD2	G	17	26	Right-handed alpha
Helix 30	AD3	G	35	45	Right-handed alpha
Helix 31	AD4	G	48	50	Right-handed 310
Helix 32	AD5	G	51	66	Right-handed alpha
Helix 33	AD6	G	72	87	Right-handed alpha
Helix 34	AD7	G	89	91	Right-handed 310
Helix 35	AD8	G	92	105	Right-handed alpha
Helix 36	AD9	G	113	118	Right-handed 310
Helix 37	AE1	H	20	24	Right-handed 310
Helix 38	AE2	H	48	59	Right-handed alpha
Helix 39	AE3	I	20	24	Right-handed 310
Helix 40	AE4	I	48	59	Right-handed alpha
Helix 41	AE5	J	6	16	Right-handed alpha
Helix 42	AE6	J	17	27	Right-handed alpha
Helix 43	AE7	J	35	46	Right-handed alpha
Helix 44	AE8	J	47	50	Right-handed 310
Helix 45	AE9	J	51	64	Right-handed alpha
Helix 46	AF1	J	72	86	Right-handed alpha
Helix 47	AF2	J	92	105	Right-handed alpha
Helix 48	AF3	J	113	118	Right-handed 310
Helix 49	AF4	K	6	15	Right-handed alpha
Helix 50	AF5	K	17	26	Right-handed alpha
Helix 51	AF6	K	35	45	Right-handed alpha
Helix 52	AF7	K	48	52	Right-handed 310
Helix 53	AF8	K	53	66	Right-handed alpha
Helix 54	AF9	K	72	87	Right-handed alpha
Helix 55	AG1	K	92	105	Right-handed alpha
Helix 56	AG2	L	48	59	Right-handed alpha

There are 11 sheets in PDB entry 5L6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	D	30	36	anti-parallel
Strand 3	D	39	44	anti-parallel
Strand 4	A	39	44	anti-parallel
Strand 5	A	31	36	anti-parallel
Strand 6	D	3	6	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	14	19	anti-parallel
Strand 3	D	14	19	anti-parallel
Strand 4	D	9	11	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	31	34	parallel
Strand 3	B	3	5	parallel
Strand 4	B	108	111	parallel
Strand 5	B	125	127	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	31	34	parallel
Strand 3	C	3	5	parallel
Strand 4	C	108	111	parallel
Strand 5	C	125	127	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1	7	first strand
Strand 2	H	30	36	anti-parallel
Strand 3	H	39	44	anti-parallel
Strand 4	E	39	44	anti-parallel
Strand 5	E	31	36	anti-parallel
Strand 6	H	2	6	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	14	19	anti-parallel
Strand 3	H	14	19	anti-parallel
Strand 4	H	9	11	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	69	first strand
Strand 2	F	31	34	parallel
Strand 3	F	3	5	parallel
Strand 4	F	108	111	parallel
Strand 5	F	125	127	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	68	69	first strand
Strand 2	G	31	34	parallel
Strand 3	G	3	5	parallel
Strand 4	G	108	111	parallel
Strand 5	G	124	127	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1	7	first strand
Strand 2	L	30	36	anti-parallel
Strand 3	L	39	44	anti-parallel
Strand 4	I	39	44	anti-parallel
Strand 5	I	30	36	anti-parallel
Strand 6	L	2	11	anti-parallel
Strand 7	L	14	19	anti-parallel
Strand 8	I	14	19	anti-parallel
Strand 9	I	9	11	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	68	69	first strand
Strand 2	J	31	34	parallel
Strand 3	J	3	5	parallel
Strand 4	J	108	111	parallel
Strand 5	J	125	127	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	68	69	first strand
Strand 2	K	31	34	parallel
Strand 3	K	3	5	parallel
Strand 4	K	108	111	parallel
Strand 5	K	125	127	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L6M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L6M