Analysis of interatomic Contacts of Structural Units in PDB entry:
5L6W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L6W entry

There are 2 chains in PDB entry 5L6W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 SER 328ARG 633
C
 ALA 2LEU 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5L6W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
335 337Right-handed 310
Helix 2
AA2
L
374 390Right-handed alpha
Helix 3
AA3
L
420 427Right-handed alpha
Helix 4
AA4
L
433 454Right-handed alpha
Helix 5
AA5
L
517 522Right-handed alpha
Helix 6
AA6
L
528 545Right-handed alpha
Helix 7
AA7
L
562 570Right-handed alpha
Helix 8
AA8
L
578 587Right-handed alpha
Helix 9
AA9
L
596 613Right-handed alpha
Helix 10
AB1
L
618 632Right-handed alpha
Helix 11
AB2
C
8 20Right-handed alpha
Helix 12
AB3
C
25 32Right-handed alpha
Helix 13
AB4
C
58 60Right-handed 310
Helix 14
AB5
C
66 75Right-handed alpha
Helix 15
AB6
C
110 128Right-handed alpha
Helix 16
AB7
C
139 145Right-handed alpha
Helix 17
AB8
C
146 155Right-handed alpha
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There are 5 sheets in PDB entry 5L6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
332 333first strand
Strand 2
L
399 404parallel
Strand 3
L
409 414anti-parallel
Strand 4
L
364 370anti-parallel
Strand 5
L
351 358anti-parallel
Strand 6
L
339 346anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
456 457first strand
Strand 2
L
483 484anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
466 468first strand
Strand 2
L
474 476anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
46 56parallel
Strand 3
C
33 40anti-parallel
Strand 4
C
81 90anti-parallel
Strand 5
C
95 104anti-parallel
Strand 6
C
134 137parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
46 56parallel
Strand 3
C
33 40anti-parallel
Strand 4
C
81 90anti-parallel
Strand 5
C
160 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il