Analysis of interatomic Contacts of Structural Units in PDB entry:
5L75

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L75 entry

There are 4 chains in PDB entry 5L75 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLY 236
B	MET 1	GLU 237
F	ILE 2	TRP 348
G	VAL 6	ALA 360

There are 48 helices in PDB entry 5L75. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	51	Right-handed alpha
Helix 2	AA2	A	71	79	Right-handed alpha
Helix 3	AA3	A	94	104	Right-handed alpha
Helix 4	AA4	A	112	125	Right-handed alpha
Helix 5	AA5	A	127	131	Right-handed 310
Helix 6	AA6	A	139	153	Right-handed alpha
Helix 7	AA7	A	169	185	Right-handed alpha
Helix 8	AA8	A	196	201	Right-handed alpha
Helix 9	AA9	A	220	226	Right-handed alpha
Helix 10	AB1	A	229	234	Right-handed alpha
Helix 11	AB2	B	45	51	Right-handed alpha
Helix 12	AB3	B	94	104	Right-handed alpha
Helix 13	AB4	B	112	125	Right-handed alpha
Helix 14	AB5	B	127	131	Right-handed 310
Helix 15	AB6	B	139	153	Right-handed alpha
Helix 16	AB7	B	171	186	Right-handed alpha
Helix 17	AB8	B	196	201	Right-handed alpha
Helix 18	AB9	B	220	227	Right-handed alpha
Helix 19	AC1	B	227	232	Right-handed alpha
Helix 20	AC2	F	3	40	Right-handed alpha
Helix 21	AC3	F	47	55	Right-handed alpha
Helix 22	AC4	F	55	82	Right-handed alpha
Helix 23	AC5	F	83	89	Right-handed alpha
Helix 24	AC6	F	95	119	Right-handed alpha
Helix 25	AC7	F	119	129	Right-handed alpha
Helix 26	AC8	F	132	137	Right-handed alpha
Helix 27	AC9	F	265	270	Right-handed alpha
Helix 28	AD1	F	270	283	Right-handed alpha
Helix 29	AD2	F	284	287	Right-handed 310
Helix 30	AD3	F	298	317	Right-handed alpha
Helix 31	AD4	F	330	345	Right-handed alpha
Helix 32	AD5	F	346	348	Right-handed 310
Helix 33	AD6	G	7	34	Right-handed alpha
Helix 34	AD7	G	48	54	Right-handed alpha
Helix 35	AD8	G	59	63	Right-handed 310
Helix 36	AD9	G	66	72	Right-handed alpha
Helix 37	AE1	G	73	86	Right-handed alpha
Helix 38	AE2	G	87	94	Right-handed alpha
Helix 39	AE3	G	98	109	Right-handed alpha
Helix 40	AE4	G	109	123	Right-handed alpha
Helix 41	AE5	G	123	135	Right-handed alpha
Helix 42	AE6	G	250	260	Right-handed alpha
Helix 43	AE7	G	269	277	Right-handed alpha
Helix 44	AE8	G	280	297	Right-handed alpha
Helix 45	AE9	G	304	325	Right-handed alpha
Helix 46	AF1	G	327	332	Right-handed 310
Helix 47	AF2	G	336	342	Right-handed alpha
Helix 48	AF3	G	346	359	Right-handed alpha

There are 12 sheets in PDB entry 5L75. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	3	6	anti-parallel
Strand 3	A	60	61	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	19	22	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	158	161	parallel
Strand 3	A	189	192	parallel
Strand 4	A	32	35	parallel
Strand 5	A	206	211	parallel
Strand 6	A	214	219	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	27	first strand
Strand 2	B	3	13	anti-parallel
Strand 3	B	57	62	anti-parallel
Strand 4	B	65	66	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	159	161	parallel
Strand 3	B	190	192	parallel
Strand 4	B	31	35	parallel
Strand 5	B	206	211	parallel
Strand 6	B	214	217	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	151	first strand
Strand 2	F	158	160	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	190	first strand
Strand 2	F	210	212	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	193	195	first strand
Strand 2	F	205	207	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	153	first strand
Strand 2	G	162	163	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	166	first strand
Strand 2	G	172	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	197	198	first strand
Strand 2	G	201	204	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	210	213	first strand
Strand 2	G	221	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L75

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L75