Analysis of interatomic Contacts of Structural Units in PDB entry:
5L77


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L77 entry

There is 1 chain in PDB entry 5L77 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18ALA 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5L77. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 51Right-handed 310
Helix 2
AA2
A
59 70Right-handed alpha
Helix 3
AA3
A
79 83Right-handed 310
Helix 4
AA4
A
96 100Right-handed 310
Helix 5
AA5
A
117 132Right-handed alpha
Helix 6
AA6
A
145 161Right-handed alpha
Helix 7
AA7
A
173 175Right-handed 310
Helix 8
AA8
A
176 181Right-handed alpha
Helix 9
AA9
A
188 207Right-handed alpha
Helix 10
AB1
A
220 222Right-handed 310
Helix 11
AB2
A
223 232Right-handed alpha
Helix 12
AB3
A
254 259Right-handed alpha
Helix 13
AB4
A
262 280Right-handed alpha
Helix 14
AB5
A
302 319Right-handed alpha
Helix 15
AB6
A
348 361Right-handed alpha
Helix 16
AB7
A
440 444Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 5L77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
416 422anti-parallel
Strand 3
A
451 452anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
416 422anti-parallel
Strand 3
A
468 474anti-parallel
Strand 4
A
391 397anti-parallel
Strand 5
A
379 386anti-parallel
Strand 6
A
363 371anti-parallel
Strand 7
A
20 35anti-parallel
Strand 8
A
404 409parallel
Strand 9
A
459 464anti-parallel
Strand 10
A
455 456anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
134 139parallel
Strand 3
A
74 78parallel
Strand 4
A
41 45parallel
Strand 5
A
324 328parallel
Strand 6
A
283 289parallel
Strand 7
A
237 243parallel
Strand 8
A
213 217parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
114 116parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
344 347anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il