Analysis of interatomic Contacts of Structural Units in PDB entry:
5L78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L78 entry

There are 2 chains in PDB entry 5L78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 481ILE 924
B
 ARG 481ILE 924
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5L78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
492 501Right-handed alpha
Helix 2
AA2
A
513 524Right-handed alpha
Helix 3
AA3
A
536 546Right-handed alpha
Helix 4
AA4
A
555 557Right-handed 310
Helix 5
AA5
A
558 570Right-handed alpha
Helix 6
AA6
A
580 586Right-handed alpha
Helix 7
AA7
A
586 593Right-handed alpha
Helix 8
AA8
A
606 621Right-handed alpha
Helix 9
AA9
A
639 642Right-handed 310
Helix 10
AB1
A
654 661Right-handed alpha
Helix 11
AB2
A
678 685Right-handed 310
Helix 12
AB3
A
707 713Right-handed alpha
Helix 13
AB4
A
729 740Right-handed alpha
Helix 14
AB5
A
759 769Right-handed alpha
Helix 15
AB6
A
776 787Right-handed alpha
Helix 16
AB7
A
790 801Right-handed alpha
Helix 17
AB8
A
813 827Right-handed alpha
Helix 18
AB9
A
868 887Right-handed alpha
Helix 19
AC1
A
900 911Right-handed alpha
Helix 20
AC2
A
912 915Right-handed 310
Helix 21
AC3
B
491 500Right-handed alpha
Helix 22
AC4
B
513 524Right-handed alpha
Helix 23
AC5
B
536 546Right-handed alpha
Helix 24
AC6
B
555 557Right-handed 310
Helix 25
AC7
B
558 570Right-handed alpha
Helix 26
AC8
B
580 586Right-handed alpha
Helix 27
AC9
B
586 593Right-handed alpha
Helix 28
AD1
B
606 621Right-handed alpha
Helix 29
AD2
B
639 642Right-handed 310
Helix 30
AD3
B
654 661Right-handed alpha
Helix 31
AD4
B
678 686Right-handed 310
Helix 32
AD5
B
707 713Right-handed alpha
Helix 33
AD6
B
729 740Right-handed alpha
Helix 34
AD7
B
759 768Right-handed alpha
Helix 35
AD8
B
776 787Right-handed alpha
Helix 36
AD9
B
790 800Right-handed alpha
Helix 37
AE1
B
813 826Right-handed alpha
Helix 38
AE2
B
868 887Right-handed alpha
Helix 39
AE3
B
900 913Right-handed alpha
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There are 6 sheets in PDB entry 5L78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 530first strand
Strand 2
A
506 511parallel
Strand 3
A
482 486parallel
Strand 4
A
549 552parallel
Strand 5
A
572 575parallel
Strand 6
A
596 598parallel
Strand 7
A
894 896parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 689first strand
Strand 2
A
697 701anti-parallel
Strand 3
A
719 727anti-parallel
Strand 4
A
625 637parallel
Strand 5
A
834 845anti-parallel
Strand 6
A
851 861anti-parallel
Strand 7
A
918 923anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
665 669first strand
Strand 2
A
672 676anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
526 530first strand
Strand 2
B
506 511parallel
Strand 3
B
482 486parallel
Strand 4
B
549 552parallel
Strand 5
B
572 575parallel
Strand 6
B
596 598parallel
Strand 7
B
894 896parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
687 689first strand
Strand 2
B
697 701anti-parallel
Strand 3
B
719 727anti-parallel
Strand 4
B
625 637parallel
Strand 5
B
834 845anti-parallel
Strand 6
B
851 861anti-parallel
Strand 7
B
918 923anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
665 669first strand
Strand 2
B
672 676anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il