Analysis of interatomic Contacts of Structural Units in PDB entry:
5L7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L7D entry

There are 2 chains in PDB entry 5L7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 58THR 553
B
 PRO 58ARG 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5L7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 110Right-handed alpha
Helix 2
AA2
A
111 114Right-handed 310
Helix 3
AA3
A
115 131Right-handed alpha
Helix 4
AA4
A
143 152Right-handed alpha
Helix 5
AA5
A
154 161Right-handed alpha
Helix 6
AA6
A
164 168Right-handed 310
Helix 7
AA7
A
223 255Right-handed alpha
Helix 8
AA8
A
255 260Right-handed alpha
Helix 9
AA9
A
263 283Right-handed alpha
Helix 10
AB1
A
284 286Right-handed 310
Helix 11
AB2
A
288 295Right-handed alpha
Helix 12
AB3
A
312 343Right-handed alpha
Helix 13
AB4
A
344 346Right-handed 310
Helix 14
AB5
A
356 379Right-handed alpha
Helix 15
AB6
A
396 404Right-handed alpha
Helix 16
AB7
A
404 1035Right-handed alpha
Helix 17
AB8
A
1037 1057Right-handed alpha
Helix 18
AB9
A
1071 1097Right-handed alpha
Helix 19
AC1
A
1098 1116Right-handed alpha
Helix 20
AC2
A
1116 1130Right-handed alpha
Helix 21
AC3
A
446 494Right-handed alpha
Helix 22
AC4
A
514 532Right-handed alpha
Helix 23
AC5
A
533 537Right-handed 310
Helix 24
AC6
A
538 553Right-handed alpha
Helix 25
AC7
B
98 110Right-handed alpha
Helix 26
AC8
B
111 113Right-handed 310
Helix 27
AC9
B
115 131Right-handed alpha
Helix 28
AD1
B
143 152Right-handed alpha
Helix 29
AD2
B
154 161Right-handed alpha
Helix 30
AD3
B
164 168Right-handed 310
Helix 31
AD4
B
180 184Right-handed 310
Helix 32
AD5
B
223 255Right-handed alpha
Helix 33
AD6
B
255 260Right-handed alpha
Helix 34
AD7
B
263 283Right-handed alpha
Helix 35
AD8
B
284 286Right-handed 310
Helix 36
AD9
B
288 295Right-handed alpha
Helix 37
AE1
B
312 343Right-handed alpha
Helix 38
AE2
B
356 379Right-handed alpha
Helix 39
AE3
B
396 404Right-handed alpha
Helix 40
AE4
B
404 1035Right-handed alpha
Helix 41
AE5
B
1037 1058Right-handed alpha
Helix 42
AE6
B
1070 1097Right-handed alpha
Helix 43
AE7
B
1098 1116Right-handed alpha
Helix 44
AE8
B
1116 1130Right-handed alpha
Helix 45
AE9
B
446 491Right-handed alpha
Helix 46
AF1
B
514 532Right-handed alpha
Helix 47
AF2
B
533 537Right-handed 310
Helix 48
AF3
B
538 551Right-handed alpha
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There are 10 sheets in PDB entry 5L7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
138 140anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
87 88anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
81 82anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
213 215anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
390 392anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
138 140anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
87 88anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
81 82anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 199first strand
Strand 2
B
213 215anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
390 392anti-parallel
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