Analysis of interatomic Contacts of Structural Units in PDB entry:
5L7L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L7L entry

There is 1 chain in PDB entry 5L7L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9ASP 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5L7L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
44 53Right-handed alpha
Helix 3
AA3
A
56 72Right-handed alpha
Helix 4
AA4
A
86 90Right-handed 310
Helix 5
AA5
A
91 108Right-handed alpha
Helix 6
AA6
A
113 122Right-handed alpha
Helix 7
AA7
A
141 152Right-handed alpha
Helix 8
AA8
A
176 190Right-handed alpha
Helix 9
AA9
A
206 217Right-handed alpha
Helix 10
AB1
A
239 247Right-handed alpha
Helix 11
AB2
A
254 267Right-handed alpha
Helix 12
AB3
A
313 317Right-handed 310
Helix 13
AB4
A
394 411Right-handed alpha
Helix 14
AB5
A
422 424Right-handed 310
Helix 15
AB6
A
425 431Right-handed alpha
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There are 2 sheets in PDB entry 5L7L. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
77 85parallel
Strand 3
A
127 135parallel
Strand 4
A
155 161parallel
Strand 5
A
193 198parallel
Strand 6
A
227 230parallel
Strand 7
A
274 277parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 340first strand
Strand 2
A
343 351anti-parallel
Strand 3
A
357 365anti-parallel
Strand 4
A
381 389anti-parallel
Strand 5
A
416 419parallel
Strand 6
A
440 444anti-parallel
Strand 7
A
435 437anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il