Analysis of interatomic Contacts of Structural Units in PDB entry:
5L7O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L7O entry

There are 3 chains in PDB entry 5L7O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 35	SER 264
B	THR 77	GLN 255
C	SER 1	PRO 276

There are 15 helices in PDB entry 5L7O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	42	Right-handed alpha
Helix 2	AA2	A	49	54	Right-handed alpha
Helix 3	AA3	A	101	108	Right-handed alpha
Helix 4	AA4	A	240	244	Right-handed 310
Helix 5	AA5	A	257	263	Right-handed alpha
Helix 6	AA6	B	79	85	Right-handed alpha
Helix 7	AA7	B	111	115	Right-handed 310
Helix 8	AA8	B	116	124	Right-handed alpha
Helix 9	AA9	B	157	160	Right-handed 310
Helix 10	AB1	B	161	171	Right-handed alpha
Helix 11	AB2	B	172	177	Right-handed alpha
Helix 12	AB3	C	55	61	Right-handed alpha
Helix 13	AB4	C	105	112	Right-handed alpha
Helix 14	AB5	C	159	163	Right-handed 310
Helix 15	AB6	C	217	221	Right-handed 310

There are 14 sheets in PDB entry 5L7O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	63	first strand
Strand 2	A	215	219	anti-parallel
Strand 3	A	117	123	anti-parallel
Strand 4	A	171	175	anti-parallel
Strand 5	C	30	31	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	67	70	anti-parallel
Strand 3	A	205	209	anti-parallel
Strand 4	A	132	138	anti-parallel
Strand 5	A	160	164	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	79	82	anti-parallel
Strand 3	C	271	274	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	110	114	anti-parallel
Strand 3	A	226	230	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	C	266	268	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	96	first strand
Strand 2	B	231	245	anti-parallel
Strand 3	B	128	139	anti-parallel
Strand 4	B	190	195	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	96	first strand
Strand 2	B	231	245	anti-parallel
Strand 3	B	128	139	anti-parallel
Strand 4	B	204	205	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	110	first strand
Strand 2	B	214	225	anti-parallel
Strand 3	B	146	155	anti-parallel
Strand 4	B	180	184	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	72	first strand
Strand 2	C	243	252	anti-parallel
Strand 3	C	121	127	anti-parallel
Strand 4	C	175	180	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	85	first strand
Strand 2	C	223	229	anti-parallel
Strand 3	C	136	143	anti-parallel
Strand 4	C	165	169	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	103	104	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	190	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	257	261	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	C	234	235	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	196	first strand
Strand 2	C	205	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L7O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L7O