Analysis of interatomic Contacts of Structural Units in PDB entry:
5L7Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L7Q entry

There are 3 chains in PDB entry 5L7Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	VAL 253
B	MET 1	ALA 251
C	ASN 2	LEU 398

There are 25 helices in PDB entry 5L7Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	38	Right-handed alpha
Helix 2	AA2	A	81	86	Right-handed alpha
Helix 3	AA3	A	90	97	Right-handed alpha
Helix 4	AA4	A	146	150	Right-handed 310
Helix 5	AA5	A	191	196	Right-handed 310
Helix 6	AA6	A	209	214	Right-handed alpha
Helix 7	AA7	A	215	217	Right-handed 310
Helix 8	AA8	B	42	47	Right-handed 310
Helix 9	AA9	B	55	60	Right-handed alpha
Helix 10	AB1	B	85	96	Right-handed alpha
Helix 11	AB2	B	99	103	Right-handed 310
Helix 12	AB3	B	106	112	Right-handed alpha
Helix 13	AB4	B	143	147	Right-handed 310
Helix 14	AB5	B	148	153	Right-handed alpha
Helix 15	AB6	B	154	161	Right-handed alpha
Helix 16	AB7	C	44	48	Right-handed 310
Helix 17	AB8	C	54	60	Right-handed alpha
Helix 18	AB9	C	105	112	Right-handed alpha
Helix 19	AC1	C	154	161	Right-handed alpha
Helix 20	AC2	C	250	252	Right-handed 310
Helix 21	AC3	C	279	283	Right-handed 310
Helix 22	AC4	C	316	320	Right-handed 310
Helix 23	AC5	C	347	359	Right-handed alpha
Helix 24	AC6	C	366	373	Right-handed alpha
Helix 25	AC7	C	375	380	Right-handed 310

There are 15 sheets in PDB entry 5L7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	C	173	178	parallel
Strand 3	C	121	127	anti-parallel
Strand 4	C	225	232	anti-parallel
Strand 5	C	63	69	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	220	225	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	119	124	anti-parallel
Strand 4	A	157	161	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	101	103	anti-parallel
Strand 3	A	232	233	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	170	172	anti-parallel
Strand 3	C	31	32	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	C	246	248	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	69	first strand
Strand 2	B	224	230	anti-parallel
Strand 3	B	119	125	anti-parallel
Strand 4	B	174	178	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	84	first strand
Strand 2	B	203	209	anti-parallel
Strand 3	B	134	141	anti-parallel
Strand 4	B	164	167	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	114	117	anti-parallel
Strand 3	B	234	237	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	208	212	anti-parallel
Strand 3	C	135	138	anti-parallel
Strand 4	C	165	168	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	102	103	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	237	238	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	204	206	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	286	288	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	299	first strand
Strand 2	C	340	345	anti-parallel
Strand 3	C	329	334	anti-parallel
Strand 4	C	308	314	anti-parallel
Strand 5	C	391	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L7Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L7Q