Analysis of interatomic Contacts of Structural Units in PDB entry:
5L7V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L7V entry

There are 2 chains in PDB entry 5L7V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1TYR 563
B
 THR 2TYR 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5L7V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
16 21Right-handed 310
Helix 3
AA3
A
92 94Right-handed 310
Helix 4
AA4
A
121 125Right-handed 310
Helix 5
AA5
A
195 199Right-handed 310
Helix 6
AA6
A
208 217Right-handed alpha
Helix 7
AA7
A
222 239Right-handed alpha
Helix 8
AA8
A
279 292Right-handed alpha
Helix 9
AA9
A
329 351Right-handed alpha
Helix 10
AB1
A
352 354Right-handed 310
Helix 11
AB2
A
364 379Right-handed alpha
Helix 12
AB3
A
391 395Right-handed 310
Helix 13
AB4
A
410 420Right-handed alpha
Helix 14
AB5
A
442 456Right-handed alpha
Helix 15
AB6
A
497 523Right-handed alpha
Helix 16
AB7
A
525 537Right-handed alpha
Helix 17
AB8
A
548 563Right-handed alpha
Helix 18
AB9
B
16 21Right-handed 310
Helix 19
AC1
B
92 94Right-handed 310
Helix 20
AC2
B
121 125Right-handed 310
Helix 21
AC3
B
195 199Right-handed 310
Helix 22
AC4
B
208 217Right-handed alpha
Helix 23
AC5
B
222 239Right-handed alpha
Helix 24
AC6
B
279 292Right-handed alpha
Helix 25
AC7
B
329 350Right-handed alpha
Helix 26
AC8
B
352 354Right-handed 310
Helix 27
AC9
B
364 379Right-handed alpha
Helix 28
AD1
B
391 395Right-handed 310
Helix 29
AD2
B
410 420Right-handed alpha
Helix 30
AD3
B
442 456Right-handed alpha
Helix 31
AD4
B
497 523Right-handed alpha
Helix 32
AD5
B
525 537Right-handed alpha
Helix 33
AD6
B
548 563Right-handed alpha
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There are 10 sheets in PDB entry 5L7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
61 70anti-parallel
Strand 3
A
147 156anti-parallel
Strand 4
A
96 106anti-parallel
Strand 5
A
128 135anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 58first strand
Strand 2
A
177 192parallel
Strand 3
A
164 174anti-parallel
Strand 4
A
74 81anti-parallel
Strand 5
A
141 143anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
89 91anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
460 463parallel
Strand 3
A
423 427parallel
Strand 4
A
400 404parallel
Strand 5
A
383 388parallel
Strand 6
A
356 361parallel
Strand 7
A
297 301parallel
Strand 8
A
243 247parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 278first strand
Strand 2
A
266 269anti-parallel
Strand 3
A
309 314parallel
Strand 4
A
319 324anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
61 70anti-parallel
Strand 3
B
147 156anti-parallel
Strand 4
B
96 106anti-parallel
Strand 5
B
128 135anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 58first strand
Strand 2
B
177 192parallel
Strand 3
B
164 174anti-parallel
Strand 4
B
74 81anti-parallel
Strand 5
B
141 143anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
89 91anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 205first strand
Strand 2
B
460 463parallel
Strand 3
B
423 427parallel
Strand 4
B
400 404parallel
Strand 5
B
383 388parallel
Strand 6
B
356 361parallel
Strand 7
B
297 301parallel
Strand 8
B
243 247parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 278first strand
Strand 2
B
266 269anti-parallel
Strand 3
B
309 314parallel
Strand 4
B
319 324anti-parallel
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