Analysis of interatomic Contacts of Structural Units in PDB entry:
5L80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L80 entry

There are 2 chains in PDB entry 5L80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 26PHE 344
B
 LEU 28LEU 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5L80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 82Right-handed alpha
Helix 2
AA2
A
107 125Right-handed alpha
Helix 3
AA3
A
143 155Right-handed alpha
Helix 4
AA4
A
157 164Right-handed alpha
Helix 5
AA5
A
171 179Right-handed alpha
Helix 6
AA6
A
188 196Right-handed alpha
Helix 7
AA7
A
207 225Right-handed alpha
Helix 8
AA8
A
235 245Right-handed alpha
Helix 9
AA9
A
251 269Right-handed alpha
Helix 10
AB1
A
275 282Right-handed alpha
Helix 11
AB2
A
282 299Right-handed alpha
Helix 12
AB3
A
302 312Right-handed alpha
Helix 13
AB4
A
317 324Right-handed alpha
Helix 14
AB5
A
329 342Right-handed alpha
Helix 15
AB6
B
74 82Right-handed alpha
Helix 16
AB7
B
107 127Right-handed alpha
Helix 17
AB8
B
143 153Right-handed alpha
Helix 18
AB9
B
157 164Right-handed alpha
Helix 19
AC1
B
171 178Right-handed alpha
Helix 20
AC2
B
188 196Right-handed alpha
Helix 21
AC3
B
207 225Right-handed alpha
Helix 22
AC4
B
234 245Right-handed alpha
Helix 23
AC5
B
251 262Right-handed alpha
Helix 24
AC6
B
277 282Right-handed alpha
Helix 25
AC7
B
282 299Right-handed alpha
Helix 26
AC8
B
318 323Right-handed alpha
Helix 27
AC9
B
333 342Right-handed alpha
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There are 4 sheets in PDB entry 5L80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
51 57anti-parallel
Strand 3
A
33 42anti-parallel
Strand 4
A
132 137parallel
Strand 5
A
165 170parallel
Strand 6
A
248 250anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 88first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
102 103anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
51 57anti-parallel
Strand 3
B
34 42anti-parallel
Strand 4
B
133 137parallel
Strand 5
B
165 170parallel
Strand 6
B
248 250anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 88first strand
Strand 2
B
91 96anti-parallel
Strand 3
B
102 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il