Analysis of interatomic Contacts of Structural Units in PDB entry:
5L86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L86 entry

There are 4 chains in PDB entry 5L86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 162
A
 THR 164ASP 249
B
 LYS 3GLY 162
B
 THR 164ASP 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5L86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 31Right-handed alpha
Helix 2
AA2
A
32 45Right-handed alpha
Helix 3
AA3
A
58 61Right-handed 310
Helix 4
AA4
A
62 67Right-handed alpha
Helix 5
AA5
A
68 72Right-handed 310
Helix 6
AA6
A
73 87Right-handed alpha
Helix 7
AA7
A
92 108Right-handed alpha
Helix 8
AA8
A
137 146Right-handed alpha
Helix 9
AA9
A
152 161Right-handed alpha
Helix 10
AB1
A
162 165Right-handed 310
Helix 11
AB2
A
188 196Right-handed alpha
Helix 12
AB3
A
205 214Right-handed alpha
Helix 13
AB4
A
216 227Right-handed alpha
Helix 14
AB5
A
227 244Right-handed alpha
Helix 15
AB6
B
9 31Right-handed alpha
Helix 16
AB7
B
32 45Right-handed alpha
Helix 17
AB8
B
58 61Right-handed 310
Helix 18
AB9
B
62 67Right-handed alpha
Helix 19
AC1
B
68 72Right-handed 310
Helix 20
AC2
B
73 86Right-handed alpha
Helix 21
AC3
B
92 108Right-handed alpha
Helix 22
AC4
B
137 146Right-handed alpha
Helix 23
AC5
B
152 161Right-handed alpha
Helix 24
AC6
B
162 165Right-handed 310
Helix 25
AC7
B
169 174Right-handed alpha
Helix 26
AC8
B
188 197Right-handed alpha
Helix 27
AC9
B
205 213Right-handed alpha
Helix 28
AD1
B
216 227Right-handed alpha
Helix 29
AD2
B
227 244Right-handed alpha
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There are 2 sheets in PDB entry 5L86. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
177 178anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
177 178anti-parallel
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