Analysis of interatomic Contacts of Structural Units in PDB entry:
5L8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L8J entry

There are 2 chains in PDB entry 5L8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 126SER 391
B
 MET 1GLY 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5L8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 131Right-handed 310
Helix 2
AA2
A
166 173Right-handed alpha
Helix 3
AA3
A
174 186Right-handed alpha
Helix 4
AA4
A
217 226Right-handed alpha
Helix 5
AA5
A
229 250Right-handed alpha
Helix 6
AA6
A
258 260Right-handed 310
Helix 7
AA7
A
292 296Right-handed 310
Helix 8
AA8
A
297 302Right-handed alpha
Helix 9
AA9
A
309 325Right-handed alpha
Helix 10
AB1
A
333 343Right-handed alpha
Helix 11
AB2
A
353 364Right-handed alpha
Helix 12
AB3
A
367 371Right-handed 310
Helix 13
AB4
A
373 380Right-handed alpha
Helix 14
AB5
A
380 387Right-handed alpha
Helix 15
AB6
B
75 78Right-handed 310
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There are 6 sheets in PDB entry 5L8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 141first strand
Strand 2
A
146 152anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
196 201anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
277 278anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
270 272anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
66 71anti-parallel
Strand 4
B
56 61anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
99 104parallel
Strand 3
B
80 87anti-parallel
Strand 4
B
36 41anti-parallel
Strand 5
B
48 49anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
99 104parallel
Strand 3
B
80 87anti-parallel
Strand 4
B
93 95anti-parallel
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