Analysis of interatomic Contacts of Structural Units in PDB entry:
5L8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L8O entry

There are 3 chains in PDB entry 5L8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3LEU 127
B
 PHE 3LEU 127
C
 PHE 3LEU 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5L8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
25 33Right-handed alpha
Helix 3
AA3
B
14 22Right-handed alpha
Helix 4
AA4
B
25 34Right-handed alpha
Helix 5
AA5
C
14 23Right-handed alpha
Helix 6
AA6
C
25 33Right-handed alpha
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There are 6 sheets in PDB entry 5L8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
47 53anti-parallel
Strand 3
A
38 44anti-parallel
Strand 4
A
5 13anti-parallel
Strand 5
A
118 126anti-parallel
Strand 6
A
108 115anti-parallel
Strand 7
A
98 104anti-parallel
Strand 8
A
90 95anti-parallel
Strand 9
A
85 87anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
47 53anti-parallel
Strand 3
A
38 44anti-parallel
Strand 4
A
5 13anti-parallel
Strand 5
B
58 65anti-parallel
Strand 6
B
47 54anti-parallel
Strand 7
B
38 44anti-parallel
Strand 8
B
5 13anti-parallel
Strand 9
B
118 126anti-parallel
Strand 10
B
108 115anti-parallel
Strand 11
B
98 104anti-parallel
Strand 12
B
90 95anti-parallel
Strand 13
B
85 87anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
79 83anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
79 83anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 65first strand
Strand 2
C
47 53anti-parallel
Strand 3
C
38 44anti-parallel
Strand 4
C
5 13anti-parallel
Strand 5
C
118 126anti-parallel
Strand 6
C
108 115anti-parallel
Strand 7
C
98 104anti-parallel
Strand 8
C
90 95anti-parallel
Strand 9
C
85 87anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 71first strand
Strand 2
C
81 82anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il