Analysis of interatomic Contacts of Structural Units in PDB entry:
5L8Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L8Q entry

There are 3 chains in PDB entry 5L8Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	VAL 253
B	MET 1	ALA 251
C	ASN 2	LEU 398

There are 21 helices in PDB entry 5L8Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	38	Right-handed alpha
Helix 2	AA2	A	81	87	Right-handed alpha
Helix 3	AA3	A	91	97	Right-handed alpha
Helix 4	AA4	A	146	150	Right-handed 310
Helix 5	AA5	A	191	197	Right-handed 310
Helix 6	AA6	A	209	214	Right-handed alpha
Helix 7	AA7	B	55	60	Right-handed alpha
Helix 8	AA8	B	85	96	Right-handed alpha
Helix 9	AA9	B	99	103	Right-handed 310
Helix 10	AB1	B	106	112	Right-handed alpha
Helix 11	AB2	B	143	147	Right-handed 310
Helix 12	AB3	B	148	153	Right-handed alpha
Helix 13	AB4	B	154	159	Right-handed alpha
Helix 14	AB5	B	241	245	Right-handed 310
Helix 15	AB6	C	54	60	Right-handed alpha
Helix 16	AB7	C	105	111	Right-handed alpha
Helix 17	AB8	C	154	159	Right-handed alpha
Helix 18	AB9	C	279	283	Right-handed 310
Helix 19	AC1	C	347	359	Right-handed alpha
Helix 20	AC2	C	366	371	Right-handed alpha
Helix 21	AC3	C	375	380	Right-handed 310

There are 16 sheets in PDB entry 5L8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	C	173	176	parallel
Strand 3	C	121	128	anti-parallel
Strand 4	C	223	232	anti-parallel
Strand 5	C	63	71	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	223	225	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	202	206	anti-parallel
Strand 3	A	120	123	anti-parallel
Strand 4	A	157	160	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	181	182	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	C	31	32	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	C	246	247	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	119	125	anti-parallel
Strand 4	B	177	178	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	114	116	anti-parallel
Strand 3	B	235	237	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	132	141	anti-parallel
Strand 3	B	203	206	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	132	141	anti-parallel
Strand 3	B	209	214	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	102	103	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	116	118	anti-parallel
Strand 3	C	237	238	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	138	first strand
Strand 2	C	165	168	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	204	206	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	286	288	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	345	first strand
Strand 2	C	329	334	anti-parallel
Strand 3	C	308	314	anti-parallel
Strand 4	C	391	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L8Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L8Q