Analysis of interatomic Contacts of Structural Units in PDB entry:
5L8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L8R entry

There are 5 chains in PDB entry 5L8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ASP 40	PRO 232
2	THR 58	ALA 265
3	ARG 55	HIS 275
4	LYS 52	LEU 249
A	PRO 16	MET 467

There are144 helices in PDB entry 5L8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	69	100	Right-handed alpha
Helix 2	AA2	1	106	113	Right-handed 310
Helix 3	AA3	1	130	151	Right-handed alpha
Helix 4	AA4	1	155	160	Right-handed alpha
Helix 5	AA5	1	162	166	Right-handed 310
Helix 6	AA6	1	173	205	Right-handed alpha
Helix 7	AA7	1	209	220	Right-handed alpha
Helix 8	AA8	1	225	231	Right-handed alpha
Helix 9	AA9	2	95	129	Right-handed alpha
Helix 10	AB1	2	136	140	Right-handed 310
Helix 11	AB2	2	148	173	Right-handed alpha
Helix 12	AB3	2	197	202	Right-handed alpha
Helix 13	AB4	2	212	242	Right-handed alpha
Helix 14	AB5	2	245	256	Right-handed alpha
Helix 15	AB6	2	261	265	Right-handed 310
Helix 16	AB7	3	63	68	Right-handed alpha
Helix 17	AB8	3	94	125	Right-handed alpha
Helix 18	AB9	3	154	178	Right-handed alpha
Helix 19	AC1	3	180	184	Right-handed 310
Helix 20	AC2	3	191	195	Right-handed 310
Helix 21	AC3	3	204	209	Right-handed alpha
Helix 22	AC4	3	216	248	Right-handed alpha
Helix 23	AC5	3	251	259	Right-handed alpha
Helix 24	AC6	3	266	271	Right-handed alpha
Helix 25	AC7	4	84	119	Right-handed alpha
Helix 26	AC8	4	137	162	Right-handed alpha
Helix 27	AC9	4	186	190	Right-handed 310
Helix 28	AD1	4	199	226	Right-handed alpha
Helix 29	AD2	4	228	239	Right-handed alpha
Helix 30	AD3	4	244	249	Right-handed alpha
Helix 31	AD4	A	43	47	Right-handed 310
Helix 32	AD5	A	51	60	Right-handed alpha
Helix 33	AD6	A	63	68	Right-handed alpha
Helix 34	AD7	A	70	103	Right-handed alpha
Helix 35	AD8	A	105	112	Right-handed alpha
Helix 36	AD9	A	128	133	Right-handed 310
Helix 37	AE1	A	148	156	Right-handed alpha
Helix 38	AE2	A	160	188	Right-handed alpha
Helix 39	AE3	A	192	198	Right-handed alpha
Helix 40	AE4	A	198	208	Right-handed alpha
Helix 41	AE5	A	209	225	Right-handed alpha
Helix 42	AE6	A	225	235	Right-handed alpha
Helix 43	AE7	A	246	251	Right-handed alpha
Helix 44	AE8	A	251	259	Right-handed alpha
Helix 45	AE9	A	260	264	Right-handed 310
Helix 46	AF1	A	266	271	Right-handed alpha
Helix 47	AF2	A	273	280	Right-handed 310
Helix 48	AF3	A	295	314	Right-handed alpha
Helix 49	AF4	A	326	334	Right-handed alpha
Helix 50	AF5	A	345	351	Right-handed alpha
Helix 51	AF6	A	353	379	Right-handed alpha
Helix 52	AF7	A	388	421	Right-handed alpha
Helix 53	AF8	A	429	438	Right-handed alpha
Helix 54	AF9	A	438	470	Right-handed alpha
Helix 55	AG1	A	472	476	Right-handed 310
Helix 56	AG2	A	486	499	Right-handed alpha
Helix 57	AG3	A	535	562	Right-handed alpha
Helix 58	AG4	A	571	576	Right-handed 310
Helix 59	AG5	A	593	624	Right-handed alpha
Helix 60	AG6	A	641	646	Right-handed alpha
Helix 61	AG7	A	648	656	Right-handed alpha
Helix 62	AG8	A	656	661	Right-handed alpha
Helix 63	AG9	A	661	666	Right-handed alpha
Helix 64	AH1	A	672	695	Right-handed alpha
Helix 65	AH2	A	696	714	Right-handed alpha
Helix 66	AH3	A	726	758	Right-handed alpha
Helix 67	AH4	B	9	14	Right-handed alpha
Helix 68	AH5	B	18	27	Right-handed alpha
Helix 69	AH6	B	30	34	Right-handed 310
Helix 70	AH7	B	38	72	Right-handed alpha
Helix 71	AH8	B	73	80	Right-handed alpha
Helix 72	AH9	B	97	105	Right-handed alpha
Helix 73	AI1	B	119	128	Right-handed alpha
Helix 74	AI2	B	131	156	Right-handed alpha
Helix 75	AI3	B	164	169	Right-handed alpha
Helix 76	AI4	B	170	181	Right-handed alpha
Helix 77	AI5	B	183	197	Right-handed alpha
Helix 78	AI6	B	197	203	Right-handed alpha
Helix 79	AI7	B	223	228	Right-handed alpha
Helix 80	AI8	B	229	235	Right-handed 310
Helix 81	AI9	B	269	288	Right-handed alpha
Helix 82	AJ1	B	300	308	Right-handed alpha
Helix 83	AJ2	B	310	314	Right-handed 310
Helix 84	AJ3	B	321	328	Right-handed alpha
Helix 85	AJ4	B	329	355	Right-handed alpha
Helix 86	AJ5	B	364	397	Right-handed alpha
Helix 87	AJ6	B	406	414	Right-handed alpha
Helix 88	AJ7	B	414	446	Right-handed alpha
Helix 89	AJ8	B	448	452	Right-handed 310
Helix 90	AJ9	B	457	467	Right-handed alpha
Helix 91	AK1	B	483	490	Right-handed alpha
Helix 92	AK2	B	493	502	Right-handed alpha
Helix 93	AK3	B	513	540	Right-handed alpha
Helix 94	AK4	B	549	554	Right-handed 310
Helix 95	AK5	B	562	566	Right-handed 310
Helix 96	AK6	B	571	603	Right-handed alpha
Helix 97	AK7	B	605	613	Right-handed alpha
Helix 98	AK8	B	615	623	Right-handed alpha
Helix 99	AK9	B	623	628	Right-handed alpha
Helix 100	AL1	B	628	633	Right-handed alpha
Helix 101	AL2	B	643	666	Right-handed alpha
Helix 102	AL3	B	667	684	Right-handed alpha
Helix 103	AL4	B	687	691	Right-handed 310
Helix 104	AL5	B	701	733	Right-handed alpha
Helix 105	AL6	C	15	21	Right-handed alpha
Helix 106	AL7	C	44	48	Right-handed 310
Helix 107	AL8	C	52	58	Right-handed alpha
Helix 108	AL9	D	92	98	Right-handed alpha
Helix 109	AM1	D	134	148	Right-handed alpha
Helix 110	AM2	D	191	195	Right-handed 310
Helix 111	AM3	D	197	202	Right-handed 310
Helix 112	AM4	E	121	123	Right-handed 310
Helix 113	AM5	F	78	82	Right-handed 310
Helix 114	AM6	F	88	107	Right-handed alpha
Helix 115	AM7	F	113	136	Right-handed alpha
Helix 116	AM8	F	153	159	Right-handed 310
Helix 117	AM9	F	160	186	Right-handed alpha
Helix 118	AN1	F	190	197	Right-handed alpha
Helix 119	AN2	F	199	208	Right-handed alpha
Helix 120	AN3	F	209	211	Right-handed 310
Helix 121	AN4	F	212	224	Right-handed alpha
Helix 122	AN5	G	59	78	Right-handed alpha
Helix 123	AN6	G	79	91	Right-handed alpha
Helix 124	AN7	G	111	116	Right-handed alpha
Helix 125	AN8	G	124	147	Right-handed alpha
Helix 126	AN9	H	59	64	Right-handed alpha
Helix 127	AO1	H	81	90	Right-handed alpha
Helix 128	AO2	H	91	94	Right-handed 310
Helix 129	AO3	H	95	117	Right-handed alpha
Helix 130	AO4	H	123	128	Right-handed alpha
Helix 131	AO5	I	4	14	Right-handed alpha
Helix 132	AO6	I	14	30	Right-handed alpha
Helix 133	AO7	J	2	9	Right-handed alpha
Helix 134	AO8	J	10	33	Right-handed alpha
Helix 135	AO9	K	49	68	Right-handed alpha
Helix 136	AP1	K	99	123	Right-handed alpha
Helix 137	AP2	L	61	63	Right-handed 310
Helix 138	AP3	L	76	85	Right-handed alpha
Helix 139	AP4	L	86	90	Right-handed 310
Helix 140	AP5	L	94	118	Right-handed alpha
Helix 141	AP6	L	123	128	Right-handed alpha
Helix 142	AP7	L	130	153	Right-handed alpha
Helix 143	AP8	L	174	177	Right-handed 310
Helix 144	AP9	L	178	203	Right-handed alpha

There are 16 sheets in PDB entry 5L8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	120	121	first strand
Strand 2	1	124	125	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	189	191	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	141	144	anti-parallel
Strand 3	A	134	135	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	526	529	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	628	first strand
Strand 2	A	634	636	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	187	188	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	132	first strand
Strand 2	D	100	107	anti-parallel
Strand 3	D	153	158	anti-parallel
Strand 4	D	164	168	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	114	first strand
Strand 2	D	120	123	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	120	first strand
Strand 2	E	103	106	anti-parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	73	76	anti-parallel
Strand 5	E	125	127	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	F	139	140	anti-parallel
Strand 3	F	146	147	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	95	first strand
Strand 2	G	98	99	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	76	77	first strand
Strand 2	K	84	85	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	59	first strand
Strand 2	L	69	70	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L8R