Analysis of interatomic Contacts of Structural Units in PDB entry:
5L8S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L8S entry

There are 4 chains in PDB entry 5L8S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 604
B	MET 1	HIS 604
C	MET 1	HIS 604
D	MET 1	HIS 604

There are 59 helices in PDB entry 5L8S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	14	Right-handed 310
Helix 2	AA2	A	255	257	Right-handed 310
Helix 3	AA3	A	337	341	Right-handed 310
Helix 4	AA4	A	390	400	Right-handed alpha
Helix 5	AA5	A	415	421	Right-handed alpha
Helix 6	AA6	A	428	445	Right-handed alpha
Helix 7	AA7	A	458	472	Right-handed alpha
Helix 8	AA8	A	473	475	Right-handed 310
Helix 9	AA9	A	486	494	Right-handed alpha
Helix 10	AB1	A	495	497	Right-handed 310
Helix 11	AB2	A	498	506	Right-handed alpha
Helix 12	AB3	A	512	520	Right-handed alpha
Helix 13	AB4	A	521	528	Right-handed 310
Helix 14	AB5	A	545	558	Right-handed alpha
Helix 15	AB6	A	576	594	Right-handed alpha
Helix 16	AB7	B	8	15	Right-handed 310
Helix 17	AB8	B	337	341	Right-handed 310
Helix 18	AB9	B	390	400	Right-handed alpha
Helix 19	AC1	B	415	421	Right-handed alpha
Helix 20	AC2	B	428	445	Right-handed alpha
Helix 21	AC3	B	458	472	Right-handed alpha
Helix 22	AC4	B	473	475	Right-handed 310
Helix 23	AC5	B	486	494	Right-handed alpha
Helix 24	AC6	B	495	497	Right-handed 310
Helix 25	AC7	B	498	506	Right-handed alpha
Helix 26	AC8	B	512	519	Right-handed alpha
Helix 27	AC9	B	520	528	Right-handed 310
Helix 28	AD1	B	544	557	Right-handed alpha
Helix 29	AD2	B	576	594	Right-handed alpha
Helix 30	AD3	C	8	13	Right-handed 310
Helix 31	AD4	C	337	341	Right-handed 310
Helix 32	AD5	C	390	399	Right-handed alpha
Helix 33	AD6	C	415	421	Right-handed alpha
Helix 34	AD7	C	428	445	Right-handed alpha
Helix 35	AD8	C	458	472	Right-handed alpha
Helix 36	AD9	C	473	475	Right-handed 310
Helix 37	AE1	C	486	494	Right-handed alpha
Helix 38	AE2	C	495	497	Right-handed 310
Helix 39	AE3	C	498	506	Right-handed alpha
Helix 40	AE4	C	512	519	Right-handed alpha
Helix 41	AE5	C	520	528	Right-handed 310
Helix 42	AE6	C	544	558	Right-handed alpha
Helix 43	AE7	C	576	594	Right-handed alpha
Helix 44	AE8	D	8	13	Right-handed 310
Helix 45	AE9	D	255	257	Right-handed 310
Helix 46	AF1	D	337	341	Right-handed 310
Helix 47	AF2	D	390	400	Right-handed alpha
Helix 48	AF3	D	415	420	Right-handed alpha
Helix 49	AF4	D	421	423	Right-handed 310
Helix 50	AF5	D	428	445	Right-handed alpha
Helix 51	AF6	D	458	472	Right-handed alpha
Helix 52	AF7	D	473	475	Right-handed 310
Helix 53	AF8	D	486	494	Right-handed alpha
Helix 54	AF9	D	495	497	Right-handed 310
Helix 55	AG1	D	498	506	Right-handed alpha
Helix 56	AG2	D	512	519	Right-handed alpha
Helix 57	AG3	D	520	528	Right-handed 310
Helix 58	AG4	D	544	558	Right-handed alpha
Helix 59	AG5	D	576	594	Right-handed alpha

There are 32 sheets in PDB entry 5L8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	23	first strand
Strand 2	A	30	34	anti-parallel
Strand 3	A	41	45	anti-parallel
Strand 4	A	53	56	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	67	first strand
Strand 2	A	74	78	anti-parallel
Strand 3	A	87	91	anti-parallel
Strand 4	A	99	102	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	115	first strand
Strand 2	A	121	126	anti-parallel
Strand 3	A	135	140	anti-parallel
Strand 4	A	146	151	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	162	first strand
Strand 2	A	169	176	anti-parallel
Strand 3	A	179	185	anti-parallel
Strand 4	A	190	192	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	210	first strand
Strand 2	A	213	218	anti-parallel
Strand 3	A	226	231	anti-parallel
Strand 4	A	236	241	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	254	first strand
Strand 2	A	259	266	anti-parallel
Strand 3	A	269	276	anti-parallel
Strand 4	A	281	284	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	297	first strand
Strand 2	A	303	308	anti-parallel
Strand 3	A	315	319	anti-parallel
Strand 4	A	326	327	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	350	first strand
Strand 2	A	356	362	anti-parallel
Strand 3	A	402	406	anti-parallel
Strand 4	A	373	375	parallel
Strand 5	A	452	457	parallel
Strand 6	A	477	481	parallel
Strand 7	A	532	537	parallel
Strand 8	A	562	567	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	30	34	anti-parallel
Strand 3	B	41	45	anti-parallel
Strand 4	B	53	56	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	67	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	99	102	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	115	first strand
Strand 2	B	121	126	anti-parallel
Strand 3	B	135	140	anti-parallel
Strand 4	B	146	151	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	162	first strand
Strand 2	B	169	176	anti-parallel
Strand 3	B	179	185	anti-parallel
Strand 4	B	190	192	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	208	first strand
Strand 2	B	213	218	anti-parallel
Strand 3	B	226	231	anti-parallel
Strand 4	B	236	241	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	254	first strand
Strand 2	B	259	266	anti-parallel
Strand 3	B	269	276	anti-parallel
Strand 4	B	281	285	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	297	first strand
Strand 2	B	303	308	anti-parallel
Strand 3	B	315	319	anti-parallel
Strand 4	B	326	327	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	350	first strand
Strand 2	B	356	362	anti-parallel
Strand 3	B	402	406	anti-parallel
Strand 4	B	373	375	parallel
Strand 5	B	452	457	parallel
Strand 6	B	477	481	parallel
Strand 7	B	532	537	parallel
Strand 8	B	562	567	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	30	34	anti-parallel
Strand 3	C	41	45	anti-parallel
Strand 4	C	53	56	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	67	first strand
Strand 2	C	73	78	anti-parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	99	102	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	115	first strand
Strand 2	C	121	126	anti-parallel
Strand 3	C	135	140	anti-parallel
Strand 4	C	146	151	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	162	first strand
Strand 2	C	168	176	anti-parallel
Strand 3	C	179	186	anti-parallel
Strand 4	C	189	192	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	210	first strand
Strand 2	C	213	218	anti-parallel
Strand 3	C	226	231	anti-parallel
Strand 4	C	236	241	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	254	first strand
Strand 2	C	259	266	anti-parallel
Strand 3	C	269	276	anti-parallel
Strand 4	C	281	284	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	297	first strand
Strand 2	C	303	309	anti-parallel
Strand 3	C	312	319	anti-parallel
Strand 4	C	326	327	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	350	first strand
Strand 2	C	356	362	anti-parallel
Strand 3	C	402	406	anti-parallel
Strand 4	C	373	375	parallel
Strand 5	C	452	457	parallel
Strand 6	C	478	481	parallel
Strand 7	C	532	537	parallel
Strand 8	C	562	567	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	30	34	anti-parallel
Strand 3	D	41	45	anti-parallel
Strand 4	D	53	56	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	67	first strand
Strand 2	D	74	78	anti-parallel
Strand 3	D	87	91	anti-parallel
Strand 4	D	99	102	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	115	first strand
Strand 2	D	121	126	anti-parallel
Strand 3	D	135	140	anti-parallel
Strand 4	D	146	151	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	162	first strand
Strand 2	D	168	176	anti-parallel
Strand 3	D	179	186	anti-parallel
Strand 4	D	189	192	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	210	first strand
Strand 2	D	213	218	anti-parallel
Strand 3	D	226	231	anti-parallel
Strand 4	D	236	241	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	254	first strand
Strand 2	D	259	266	anti-parallel
Strand 3	D	269	276	anti-parallel
Strand 4	D	281	284	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	297	first strand
Strand 2	D	303	309	anti-parallel
Strand 3	D	312	319	anti-parallel
Strand 4	D	326	327	anti-parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	350	first strand
Strand 2	D	356	362	anti-parallel
Strand 3	D	402	406	anti-parallel
Strand 4	D	373	375	parallel
Strand 5	D	452	457	parallel
Strand 6	D	478	481	parallel
Strand 7	D	532	537	parallel
Strand 8	D	562	567	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L8S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L8S