Analysis of interatomic Contacts of Structural Units in PDB entry:
5L8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L8W entry

There are 3 chains in PDB entry 5L8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 35	ASP 370
B	ARG 12	MET 559
C	MET 1	GLY 75

There are 23 helices in PDB entry 5L8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	59	Right-handed alpha
Helix 2	AA2	A	60	70	Right-handed alpha
Helix 3	AA3	A	79	93	Right-handed alpha
Helix 4	AA4	A	103	114	Right-handed alpha
Helix 5	AA5	A	115	118	Right-handed 310
Helix 6	AA6	A	125	149	Right-handed alpha
Helix 7	AA7	A	170	177	Right-handed alpha
Helix 8	AA8	A	212	220	Right-handed alpha
Helix 9	AA9	A	226	230	Right-handed 310
Helix 10	AB1	A	340	349	Right-handed 310
Helix 11	AB2	B	127	129	Right-handed 310
Helix 12	AB3	B	146	151	Right-handed alpha
Helix 13	AB4	B	402	410	Right-handed alpha
Helix 14	AB5	B	434	439	Right-handed alpha
Helix 15	AB6	B	445	449	Right-handed alpha
Helix 16	AB7	B	462	471	Right-handed alpha
Helix 17	AB8	B	474	478	Right-handed 310
Helix 18	AB9	B	531	534	Right-handed 310
Helix 19	AC1	B	535	546	Right-handed alpha
Helix 20	AC2	B	547	555	Right-handed alpha
Helix 21	AC3	C	22	35	Right-handed alpha
Helix 22	AC4	C	37	41	Right-handed 310
Helix 23	AC5	C	56	60	Right-handed 310

There are 19 sheets in PDB entry 5L8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	98	101	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	C	74	75	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	199	first strand
Strand 2	A	178	186	anti-parallel
Strand 3	A	242	250	anti-parallel
Strand 4	A	223	225	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	205	first strand
Strand 2	A	254	260	parallel
Strand 3	A	358	368	anti-parallel
Strand 4	A	297	310	anti-parallel
Strand 5	A	283	287	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	205	first strand
Strand 2	A	254	260	parallel
Strand 3	A	358	368	anti-parallel
Strand 4	A	297	310	anti-parallel
Strand 5	A	317	324	anti-parallel
Strand 6	A	327	332	anti-parallel
Strand 7	A	335	339	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	278	279	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	238	240	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	265	first strand
Strand 2	A	270	273	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	423	first strand
Strand 2	B	429	433	anti-parallel
Strand 3	B	15	21	anti-parallel
Strand 4	B	514	519	anti-parallel
Strand 5	B	524	529	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	39	first strand
Strand 2	B	44	49	anti-parallel
Strand 3	B	54	58	anti-parallel
Strand 4	B	67	71	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	84	first strand
Strand 2	B	89	94	anti-parallel
Strand 3	B	99	103	anti-parallel
Strand 4	B	108	113	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	126	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	141	145	anti-parallel
Strand 4	B	162	164	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	176	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	192	196	anti-parallel
Strand 4	B	201	206	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	218	first strand
Strand 2	B	224	229	anti-parallel
Strand 3	B	234	238	anti-parallel
Strand 4	B	243	248	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	260	first strand
Strand 2	B	266	271	anti-parallel
Strand 3	B	275	280	anti-parallel
Strand 4	B	287	292	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	302	first strand
Strand 2	B	311	316	anti-parallel
Strand 3	B	321	325	anti-parallel
Strand 4	B	355	357	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	368	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	384	388	anti-parallel
Strand 4	B	393	397	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	459	461	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	66	70	parallel
Strand 4	C	42	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L8W