Analysis of interatomic Contacts of Structural Units in PDB entry:
5L94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L94 entry

There are 2 chains in PDB entry 5L94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 17VAL 404
B
 PHE 23VAL 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5L94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 23Right-handed alpha
Helix 2
AA2
A
25 34Right-handed alpha
Helix 3
AA3
A
51 61Right-handed alpha
Helix 4
AA4
A
79 87Right-handed 310
Helix 5
AA5
A
90 101Right-handed alpha
Helix 6
AA6
A
104 110Right-handed alpha
Helix 7
AA7
A
110 126Right-handed alpha
Helix 8
AA8
A
134 138Right-handed alpha
Helix 9
AA9
A
140 152Right-handed alpha
Helix 10
AB1
A
154 156Right-handed 310
Helix 11
AB2
A
157 170Right-handed alpha
Helix 12
AB3
A
176 208Right-handed alpha
Helix 13
AB4
A
212 223Right-handed alpha
Helix 14
AB5
A
228 246Right-handed alpha
Helix 15
AB6
A
246 261Right-handed alpha
Helix 16
AB7
A
261 271Right-handed alpha
Helix 17
AB8
A
274 286Right-handed alpha
Helix 18
AB9
A
316 321Right-handed alpha
Helix 19
AC1
A
354 373Right-handed alpha
Helix 20
AC2
B
25 36Right-handed alpha
Helix 21
AC3
B
51 61Right-handed alpha
Helix 22
AC4
B
83 87Right-handed 310
Helix 23
AC5
B
90 100Right-handed alpha
Helix 24
AC6
B
101 104Right-handed 310
Helix 25
AC7
B
110 126Right-handed alpha
Helix 26
AC8
B
134 138Right-handed alpha
Helix 27
AC9
B
140 152Right-handed alpha
Helix 28
AD1
B
154 156Right-handed 310
Helix 29
AD2
B
157 169Right-handed alpha
Helix 30
AD3
B
181 208Right-handed alpha
Helix 31
AD4
B
212 220Right-handed alpha
Helix 32
AD5
B
228 261Right-handed alpha
Helix 33
AD6
B
261 271Right-handed alpha
Helix 34
AD7
B
274 286Right-handed alpha
Helix 35
AD8
B
316 321Right-handed alpha
Helix 36
AD9
B
354 373Right-handed alpha
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There are 6 sheets in PDB entry 5L94. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
46 49anti-parallel
Strand 3
A
312 315parallel
Strand 4
A
294 296anti-parallel
Strand 5
A
65 66anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
399 401anti-parallel
Strand 3
A
377 378anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
305 307anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
46 49anti-parallel
Strand 3
B
312 315parallel
Strand 4
B
294 296anti-parallel
Strand 5
B
65 66anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
399 401anti-parallel
Strand 3
B
377 378anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 302first strand
Strand 2
B
305 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il