Analysis of interatomic Contacts of Structural Units in PDB entry:
5L9L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L9L entry

There are 2 chains in PDB entry 5L9L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 30LEU 352
B
 MET 30ARG 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5L9L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 49Right-handed alpha
Helix 2
AA2
A
49 58Right-handed alpha
Helix 3
AA3
A
69 79Right-handed alpha
Helix 4
AA4
A
91 99Right-handed alpha
Helix 5
AA5
A
111 115Right-handed 310
Helix 6
AA6
A
138 142Right-handed alpha
Helix 7
AA7
A
148 154Right-handed alpha
Helix 8
AA8
A
170 179Right-handed alpha
Helix 9
AA9
A
182 184Right-handed 310
Helix 10
AB1
A
185 190Right-handed alpha
Helix 11
AB2
A
192 207Right-handed alpha
Helix 12
AB3
A
216 226Right-handed alpha
Helix 13
AB4
A
236 245Right-handed alpha
Helix 14
AB5
A
271 283Right-handed alpha
Helix 15
AB6
A
284 289Right-handed alpha
Helix 16
AB7
A
303 309Right-handed alpha
Helix 17
AB8
A
311 316Right-handed alpha
Helix 18
AB9
A
321 326Right-handed alpha
Helix 19
AC1
A
332 352Right-handed alpha
Helix 20
AC2
B
38 49Right-handed alpha
Helix 21
AC3
B
49 58Right-handed alpha
Helix 22
AC4
B
69 79Right-handed alpha
Helix 23
AC5
B
91 99Right-handed alpha
Helix 24
AC6
B
111 115Right-handed 310
Helix 25
AC7
B
138 142Right-handed alpha
Helix 26
AC8
B
148 154Right-handed alpha
Helix 27
AC9
B
170 179Right-handed alpha
Helix 28
AD1
B
182 184Right-handed 310
Helix 29
AD2
B
185 190Right-handed alpha
Helix 30
AD3
B
192 207Right-handed alpha
Helix 31
AD4
B
216 226Right-handed alpha
Helix 32
AD5
B
236 245Right-handed alpha
Helix 33
AD6
B
271 283Right-handed alpha
Helix 34
AD7
B
284 289Right-handed alpha
Helix 35
AD8
B
303 309Right-handed alpha
Helix 36
AD9
B
311 316Right-handed alpha
Helix 37
AE1
B
321 326Right-handed alpha
Helix 38
AE2
B
332 351Right-handed alpha
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There are 4 sheets in PDB entry 5L9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
32 36parallel
Strand 3
A
85 89parallel
Strand 4
A
249 265anti-parallel
Strand 5
A
125 137anti-parallel
Strand 6
A
298 299anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
162 165parallel
Strand 3
A
231 235parallel
Strand 4
A
125 137anti-parallel
Strand 5
A
249 265anti-parallel
Strand 6
A
329 330parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
32 36parallel
Strand 3
B
85 89parallel
Strand 4
B
249 265anti-parallel
Strand 5
B
125 137anti-parallel
Strand 6
B
298 299anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 214first strand
Strand 2
B
162 165parallel
Strand 3
B
231 235parallel
Strand 4
B
125 137anti-parallel
Strand 5
B
249 265anti-parallel
Strand 6
B
329 330parallel
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