Analysis of interatomic Contacts of Structural Units in PDB entry:
5L9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L9P entry

There are 2 chains in PDB entry 5L9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13LEU 352
B
 GLY 11LEU 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 5L9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 49Right-handed alpha
Helix 2
AA2
A
49 58Right-handed alpha
Helix 3
AA3
A
69 79Right-handed alpha
Helix 4
AA4
A
92 99Right-handed alpha
Helix 5
AA5
A
106 110Right-handed 310
Helix 6
AA6
A
111 115Right-handed 310
Helix 7
AA7
A
138 142Right-handed alpha
Helix 8
AA8
A
148 153Right-handed alpha
Helix 9
AA9
A
170 179Right-handed alpha
Helix 10
AB1
A
182 184Right-handed 310
Helix 11
AB2
A
185 190Right-handed alpha
Helix 12
AB3
A
192 207Right-handed alpha
Helix 13
AB4
A
216 227Right-handed alpha
Helix 14
AB5
A
236 245Right-handed alpha
Helix 15
AB6
A
271 283Right-handed alpha
Helix 16
AB7
A
284 289Right-handed alpha
Helix 17
AB8
A
290 295Right-handed alpha
Helix 18
AB9
A
303 309Right-handed alpha
Helix 19
AC1
A
311 316Right-handed alpha
Helix 20
AC2
A
321 326Right-handed alpha
Helix 21
AC3
A
332 352Right-handed alpha
Helix 22
AC4
B
38 49Right-handed alpha
Helix 23
AC5
B
49 58Right-handed alpha
Helix 24
AC6
B
69 79Right-handed alpha
Helix 25
AC7
B
92 99Right-handed alpha
Helix 26
AC8
B
106 110Right-handed 310
Helix 27
AC9
B
111 115Right-handed 310
Helix 28
AD1
B
138 142Right-handed alpha
Helix 29
AD2
B
148 153Right-handed alpha
Helix 30
AD3
B
170 179Right-handed alpha
Helix 31
AD4
B
182 184Right-handed 310
Helix 32
AD5
B
185 190Right-handed alpha
Helix 33
AD6
B
192 207Right-handed alpha
Helix 34
AD7
B
216 226Right-handed alpha
Helix 35
AD8
B
236 245Right-handed alpha
Helix 36
AD9
B
271 283Right-handed alpha
Helix 37
AE1
B
284 289Right-handed alpha
Helix 38
AE2
B
290 294Right-handed 310
Helix 39
AE3
B
303 309Right-handed alpha
Helix 40
AE4
B
311 316Right-handed alpha
Helix 41
AE5
B
321 326Right-handed alpha
Helix 42
AE6
B
332 352Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5L9P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
61 65parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
257 265anti-parallel
Strand 3
A
125 136anti-parallel
Strand 4
A
231 235anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
249 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
210 214parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
61 65parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
257 265anti-parallel
Strand 3
B
125 136anti-parallel
Strand 4
B
231 235anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
249 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
210 214parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il