Analysis of interatomic Contacts of Structural Units in PDB entry:
5L9S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L9S entry

There are 2 chains in PDB entry 5L9S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 35ARG 360
B
 GLU 36ARG 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5L9S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 56Right-handed alpha
Helix 2
AA2
A
56 65Right-handed alpha
Helix 3
AA3
A
74 88Right-handed alpha
Helix 4
AA4
A
101 104Right-handed 310
Helix 5
AA5
A
105 112Right-handed alpha
Helix 6
AA6
A
115 120Right-handed alpha
Helix 7
AA7
A
121 123Right-handed 310
Helix 8
AA8
A
160 165Right-handed alpha
Helix 9
AA9
A
182 193Right-handed alpha
Helix 10
AB1
A
196 200Right-handed 310
Helix 11
AB2
A
204 216Right-handed alpha
Helix 12
AB3
A
225 235Right-handed alpha
Helix 13
AB4
A
245 254Right-handed alpha
Helix 14
AB5
A
280 293Right-handed alpha
Helix 15
AB6
A
294 306Right-handed alpha
Helix 16
AB7
A
311 318Right-handed alpha
Helix 17
AB8
A
319 324Right-handed alpha
Helix 18
AB9
A
328 335Right-handed alpha
Helix 19
AC1
A
340 360Right-handed alpha
Helix 20
AC2
B
45 56Right-handed alpha
Helix 21
AC3
B
56 65Right-handed alpha
Helix 22
AC4
B
74 89Right-handed alpha
Helix 23
AC5
B
101 104Right-handed 310
Helix 24
AC6
B
105 112Right-handed alpha
Helix 25
AC7
B
115 120Right-handed alpha
Helix 26
AC8
B
121 123Right-handed 310
Helix 27
AC9
B
129 131Right-handed 310
Helix 28
AD1
B
160 165Right-handed alpha
Helix 29
AD2
B
182 193Right-handed alpha
Helix 30
AD3
B
196 200Right-handed 310
Helix 31
AD4
B
204 217Right-handed alpha
Helix 32
AD5
B
225 235Right-handed alpha
Helix 33
AD6
B
245 254Right-handed alpha
Helix 34
AD7
B
280 294Right-handed alpha
Helix 35
AD8
B
294 306Right-handed alpha
Helix 36
AD9
B
311 318Right-handed alpha
Helix 37
AE1
B
319 324Right-handed alpha
Helix 38
AE2
B
328 335Right-handed alpha
Helix 39
AE3
B
340 360Right-handed alpha
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There are 4 sheets in PDB entry 5L9S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
38 43parallel
Strand 3
A
95 99parallel
Strand 4
A
258 274anti-parallel
Strand 5
A
137 150anti-parallel
Strand 6
A
133 134anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
38 43parallel
Strand 3
A
95 99parallel
Strand 4
A
258 274anti-parallel
Strand 5
A
137 150anti-parallel
Strand 6
A
240 244anti-parallel
Strand 7
A
174 177parallel
Strand 8
A
219 223parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
38 43parallel
Strand 3
B
95 99parallel
Strand 4
B
258 274anti-parallel
Strand 5
B
137 150anti-parallel
Strand 6
B
133 134anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
38 43parallel
Strand 3
B
95 99parallel
Strand 4
B
258 274anti-parallel
Strand 5
B
137 150anti-parallel
Strand 6
B
240 244anti-parallel
Strand 7
B
174 177parallel
Strand 8
B
219 223parallel
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