Analysis of interatomic Contacts of Structural Units in PDB entry:
5L9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L9W entry

There are 2 chains in PDB entry 5L9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ALA 684
B	ASP 8	VAL 618

There are 81 helices in PDB entry 5L9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	14	Right-handed alpha
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	30	54	Right-handed alpha
Helix 4	AA4	A	55	56	Right-handed 310
Helix 5	AA5	A	57	61	Right-handed 310
Helix 6	AA6	A	91	103	Right-handed alpha
Helix 7	AA7	A	104	106	Right-handed 310
Helix 8	AA8	A	166	170	Right-handed 310
Helix 9	AA9	A	186	198	Right-handed alpha
Helix 10	AB1	A	200	230	Right-handed alpha
Helix 11	AB2	A	230	255	Right-handed alpha
Helix 12	AB3	A	309	325	Right-handed alpha
Helix 13	AB4	A	332	337	Right-handed 310
Helix 14	AB5	A	359	364	Right-handed alpha
Helix 15	AB6	A	364	380	Right-handed alpha
Helix 16	AB7	A	384	388	Right-handed 310
Helix 17	AB8	A	416	420	Right-handed 310
Helix 18	AB9	A	448	456	Right-handed alpha
Helix 19	AC1	A	528	535	Right-handed alpha
Helix 20	AC2	A	543	550	Right-handed alpha
Helix 21	AC3	A	588	592	Right-handed 310
Helix 22	AC4	A	593	603	Right-handed alpha
Helix 23	AC5	A	607	616	Right-handed alpha
Helix 24	AC6	A	628	646	Right-handed alpha
Helix 25	AC7	A	649	657	Right-handed alpha
Helix 26	AC8	A	663	667	Right-handed 310
Helix 27	AC9	B	43	58	Right-handed alpha
Helix 28	AD1	B	62	67	Right-handed alpha
Helix 29	AD2	B	68	70	Right-handed 310
Helix 30	AD3	B	78	86	Right-handed alpha
Helix 31	AD4	B	102	107	Right-handed alpha
Helix 32	AD5	B	110	114	Right-handed 310
Helix 33	AD6	B	117	122	Right-handed 310
Helix 34	AD7	B	123	127	Right-handed 310
Helix 35	AD8	B	157	171	Right-handed alpha
Helix 36	AD9	B	187	201	Right-handed alpha
Helix 37	AE1	B	214	218	Right-handed alpha
Helix 38	AE2	B	222	254	Right-handed alpha
Helix 39	AE3	B	273	275	Right-handed 310
Helix 40	AE4	B	276	280	Right-handed 310
Helix 41	AE5	B	282	299	Right-handed alpha
Helix 42	AE6	B	322	326	Right-handed 310
Helix 43	AE7	B	378	382	Right-handed 310
Helix 44	AE8	B	389	397	Right-handed alpha
Helix 45	AE9	B	413	425	Right-handed alpha
Helix 46	AF1	B	432	459	Right-handed alpha
Helix 47	AF2	B	462	466	Right-handed 310
Helix 48	AF3	B	474	483	Right-handed alpha
Helix 49	AF4	B	494	506	Right-handed alpha
Helix 50	AF5	B	531	553	Right-handed alpha
Helix 51	AF6	B	556	560	Right-handed 310
Helix 52	AF7	B	588	607	Right-handed alpha
Helix 53	AF8	B	608	612	Right-handed 310
Helix 54	AF9	B	613	616	Right-handed 310
Helix 55	AG1	B	646	648	Right-handed 310
Helix 56	AG2	B	673	675	Right-handed 310
Helix 57	AG3	b	34	50	Right-handed alpha
Helix 58	AG4	b	54	61	Right-handed alpha
Helix 59	AG5	b	70	78	Right-handed alpha
Helix 60	AG6	b	103	108	Right-handed alpha
Helix 61	AG7	b	110	112	Right-handed 310
Helix 62	AG8	b	122	136	Right-handed alpha
Helix 63	AG9	b	152	166	Right-handed alpha
Helix 64	AH1	b	179	183	Right-handed alpha
Helix 65	AH2	b	187	221	Right-handed alpha
Helix 66	AH3	b	239	241	Right-handed 310
Helix 67	AH4	b	242	247	Right-handed 310
Helix 68	AH5	b	248	265	Right-handed alpha
Helix 69	AH6	b	352	360	Right-handed alpha
Helix 70	AH7	b	376	388	Right-handed alpha
Helix 71	AH8	b	395	423	Right-handed alpha
Helix 72	AH9	b	437	450	Right-handed alpha
Helix 73	AI1	b	459	461	Right-handed 310
Helix 74	AI2	b	462	470	Right-handed alpha
Helix 75	AI3	b	492	511	Right-handed alpha
Helix 76	AI4	b	514	518	Right-handed 310
Helix 77	AI5	b	546	560	Right-handed alpha
Helix 78	AI6	b	613	617	Right-handed 310
Helix 79	AI7	C	35	39	Right-handed 310
Helix 80	AI8	C	46	50	Right-handed 310
Helix 81	AI9	C	100	111	Right-handed alpha

There are 25 sheets in PDB entry 5L9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	82	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	A	138	147	anti-parallel
Strand 4	A	127	135	anti-parallel
Strand 5	A	111	114	anti-parallel
Strand 6	A	177	181	anti-parallel
Strand 7	A	184	185	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	343	first strand
Strand 2	A	290	295	parallel
Strand 3	A	273	287	anti-parallel
Strand 4	A	259	270	anti-parallel
Strand 5	C	97	99	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	415	first strand
Strand 2	A	399	404	anti-parallel
Strand 3	A	492	497	anti-parallel
Strand 4	A	564	570	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	480	487	anti-parallel
Strand 3	A	463	466	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	480	487	anti-parallel
Strand 3	A	574	579	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	525	first strand
Strand 2	A	556	560	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	648	first strand
Strand 2	C	41	45	anti-parallel
Strand 3	C	69	74	anti-parallel
Strand 4	C	81	87	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	38	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	12	17	anti-parallel
Strand 4	B	72	77	parallel
Strand 5	B	259	263	parallel
Strand 6	B	269	271	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	142	first strand
Strand 2	B	92	97	parallel
Strand 3	B	175	179	parallel
Strand 4	B	211	213	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	152	154	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	349	first strand
Strand 2	B	314	319	anti-parallel
Strand 3	B	304	309	anti-parallel
Strand 4	B	467	471	parallel
Strand 5	B	488	491	parallel
Strand 6	B	710	714	anti-parallel
Strand 7	B	700	704	anti-parallel
Strand 8	B	680	681	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	336	337	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	365	371	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	521	first strand
Strand 2	B	618	629	anti-parallel
Strand 3	B	561	570	anti-parallel
Strand 4	B	577	580	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	658	first strand
Strand 2	B	663	671	anti-parallel
Strand 3	B	685	688	parallel
Strand 4	B	693	696	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	23	29	first strand
Strand 2	b	12	18	anti-parallel
Strand 3	b	2	8	anti-parallel
Strand 4	b	62	69	parallel
Strand 5	b	226	229	parallel
Strand 6	b	235	237	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	114	117	first strand
Strand 2	b	84	89	parallel
Strand 3	b	140	144	parallel
Strand 4	b	176	178	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	289	290	first strand
Strand 2	b	280	286	anti-parallel
Strand 3	b	311	313	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	289	290	first strand
Strand 2	b	280	286	anti-parallel
Strand 3	b	270	274	anti-parallel
Strand 4	b	430	434	parallel
Strand 5	b	454	456	parallel
Strand 6	b	652	653	anti-parallel
Strand 7	b	643	646	anti-parallel
Strand 8	b	622	624	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	292	298	first strand
Strand 2	b	301	308	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	321	322	first strand
Strand 2	b	329	330	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	473	478	first strand
Strand 2	b	569	575	anti-parallel
Strand 3	b	519	524	anti-parallel
Strand 4	b	538	542	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	627	630	first strand
Strand 2	b	635	638	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	11	14	anti-parallel
Strand 3	C	19	22	anti-parallel
Strand 4	C	28	31	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	119	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L9W