Analysis of interatomic Contacts of Structural Units in PDB entry:
5LA9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LA9 entry

There are 4 chains in PDB entry 5LA9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 188VAL 401
B
 LEU 188GLY 406
C
 ASP 395PHE 413
D
 ASP 395PHE 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5LA9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 197Right-handed alpha
Helix 2
AA2
A
197 206Right-handed alpha
Helix 3
AA3
A
215 233Right-handed alpha
Helix 4
AA4
A
266 284Right-handed alpha
Helix 5
AA5
A
335 340Right-handed alpha
Helix 6
AA6
A
393 401Right-handed alpha
Helix 7
AA7
B
189 197Right-handed alpha
Helix 8
AA8
B
197 205Right-handed alpha
Helix 9
AA9
B
214 233Right-handed alpha
Helix 10
AB1
B
266 284Right-handed alpha
Helix 11
AB2
B
393 406Right-handed alpha
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There are 6 sheets in PDB entry 5LA9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 211first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
383 392anti-parallel
Strand 5
A
298 303anti-parallel
Strand 6
A
255 259anti-parallel
Strand 7
A
236 237anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 211first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
383 392anti-parallel
Strand 5
A
292 296anti-parallel
Strand 6
C
408 410anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
374 376anti-parallel
Strand 3
A
343 345anti-parallel
Strand 4
A
354 356anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 210first strand
Strand 2
B
362 367anti-parallel
Strand 3
B
322 329anti-parallel
Strand 4
B
382 392anti-parallel
Strand 5
B
298 304anti-parallel
Strand 6
B
255 259anti-parallel
Strand 7
B
236 237anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 210first strand
Strand 2
B
362 367anti-parallel
Strand 3
B
322 329anti-parallel
Strand 4
B
382 392anti-parallel
Strand 5
B
292 295anti-parallel
Strand 6
D
409 410anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 313first strand
Strand 2
B
374 379anti-parallel
Strand 3
B
343 345anti-parallel
Strand 4
B
354 356anti-parallel
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