Analysis of interatomic Contacts of Structural Units in PDB entry:
5LAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LAD entry

There is 1 chain in PDB entry 5LAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9PHE 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5LAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 27Right-handed alpha
Helix 2
AA2
A
72 76Right-handed 310
Helix 3
AA3
A
78 87Right-handed alpha
Helix 4
AA4
A
101 114Right-handed alpha
Helix 5
AA5
A
130 139Right-handed alpha
Helix 6
AA6
A
158 169Right-handed alpha
Helix 7
AA7
A
204 217Right-handed alpha
Helix 8
AA8
A
225 227Right-handed 310
Helix 9
AA9
A
228 236Right-handed alpha
Helix 10
AB1
A
249 257Right-handed alpha
Helix 11
AB2
A
267 274Right-handed alpha
Helix 12
AB3
A
276 285Right-handed alpha
Helix 13
AB4
A
314 325Right-handed alpha
Helix 14
AB5
A
340 345Right-handed alpha
Helix 15
AB6
A
359 373Right-handed alpha
Helix 16
AB7
A
380 388Right-handed alpha
Helix 17
AB8
A
389 394Right-handed alpha
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There are 3 sheets in PDB entry 5LAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
58 64anti-parallel
Strand 3
A
10 15parallel
Strand 4
A
91 94parallel
Strand 5
A
118 120parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 223first strand
Strand 2
A
188 192parallel
Strand 3
A
242 245parallel
Strand 4
A
263 266parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 333first strand
Strand 2
A
295 299parallel
Strand 3
A
349 352parallel
Strand 4
A
377 379parallel
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