Analysis of interatomic Contacts of Structural Units in PDB entry:
5LB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LB8 entry

There are 2 chains in PDB entry 5LB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 12	SER 452
D	PRO 12	SER 452

There are 41 helices in PDB entry 5LB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	31	44	Right-handed alpha
Helix 3	AA3	A	55	69	Right-handed alpha
Helix 4	AA4	A	79	92	Right-handed alpha
Helix 5	AA5	A	105	117	Right-handed alpha
Helix 6	AA6	A	129	134	Right-handed alpha
Helix 7	AA7	A	138	147	Right-handed alpha
Helix 8	AA8	A	158	163	Right-handed 310
Helix 9	AA9	A	170	174	Right-handed 310
Helix 10	AB1	A	175	183	Right-handed alpha
Helix 11	AB2	A	196	207	Right-handed alpha
Helix 12	AB3	A	237	248	Right-handed alpha
Helix 13	AB4	A	268	281	Right-handed alpha
Helix 14	AB5	A	294	307	Right-handed alpha
Helix 15	AB6	A	339	348	Right-handed alpha
Helix 16	AB7	A	364	384	Right-handed alpha
Helix 17	AB8	A	389	408	Right-handed alpha
Helix 18	AB9	A	411	421	Right-handed alpha
Helix 19	AC1	A	431	436	Right-handed alpha
Helix 20	AC2	A	438	450	Right-handed alpha
Helix 21	AC3	D	13	23	Right-handed alpha
Helix 22	AC4	D	31	44	Right-handed alpha
Helix 23	AC5	D	56	69	Right-handed alpha
Helix 24	AC6	D	79	93	Right-handed alpha
Helix 25	AC7	D	105	118	Right-handed alpha
Helix 26	AC8	D	129	134	Right-handed alpha
Helix 27	AC9	D	138	147	Right-handed alpha
Helix 28	AD1	D	159	163	Right-handed 310
Helix 29	AD2	D	170	174	Right-handed 310
Helix 30	AD3	D	175	183	Right-handed alpha
Helix 31	AD4	D	196	207	Right-handed alpha
Helix 32	AD5	D	233	235	Right-handed 310
Helix 33	AD6	D	237	248	Right-handed alpha
Helix 34	AD7	D	268	282	Right-handed alpha
Helix 35	AD8	D	294	307	Right-handed alpha
Helix 36	AD9	D	339	348	Right-handed alpha
Helix 37	AE1	D	364	384	Right-handed alpha
Helix 38	AE2	D	389	408	Right-handed alpha
Helix 39	AE3	D	411	421	Right-handed alpha
Helix 40	AE4	D	431	436	Right-handed alpha
Helix 41	AE5	D	438	450	Right-handed alpha

There are 6 sheets in PDB entry 5LB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	125	128	parallel
Strand 3	A	72	76	parallel
Strand 4	A	151	156	parallel
Strand 5	A	188	192	parallel
Strand 6	A	47	51	parallel
Strand 7	A	213	217	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	231	first strand
Strand 2	A	357	363	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	289	first strand
Strand 2	A	312	315	parallel
Strand 3	A	262	265	parallel
Strand 4	A	331	333	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	100	first strand
Strand 2	D	125	128	parallel
Strand 3	D	72	76	parallel
Strand 4	D	151	157	parallel
Strand 5	D	188	192	parallel
Strand 6	D	47	51	parallel
Strand 7	D	213	217	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	231	first strand
Strand 2	D	357	363	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	289	first strand
Strand 2	D	312	315	parallel
Strand 3	D	262	265	parallel
Strand 4	D	331	333	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LB8