Analysis of interatomic Contacts of Structural Units in PDB entry:
5LBK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LBK entry

There are 2 chains in PDB entry 5LBK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 558	SER 688
B	PRO 558	SER 688

There are 8 helices in PDB entry 5LBK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	569	581	Right-handed alpha
Helix 2	AA2	A	586	599	Right-handed alpha
Helix 3	AA3	A	630	638	Right-handed alpha
Helix 4	AA4	A	643	656	Right-handed alpha
Helix 5	AA5	B	569	581	Right-handed alpha
Helix 6	AA6	B	586	599	Right-handed alpha
Helix 7	AA7	B	630	638	Right-handed alpha
Helix 8	AA8	B	643	654	Right-handed alpha

There is 1 sheet (AA1) in PDB entry 5LBK.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	612	first strand
Strand 2	A	616	621	anti-parallel
Strand 3	A	624	629	anti-parallel
Strand 4	A	670	676	anti-parallel
Strand 5	A	680	688	anti-parallel
Strand 6	A	559	565	anti-parallel
Strand 7	B	609	612	anti-parallel
Strand 8	B	616	621	anti-parallel
Strand 9	B	624	629	anti-parallel
Strand 10	B	670	676	anti-parallel
Strand 11	B	680	688	anti-parallel
Strand 12	B	559	565	anti-parallel

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LBK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LBK