Analysis of interatomic Contacts of Structural Units in PDB entry:
5LC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LC0 entry

There are 2 chains in PDB entry 5LC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -1GLN 1167
B
 MET -1GLN 1167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 5LC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1050 1054Right-handed alpha
Helix 2
AA2
B
1049 1054Right-handed alpha
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There are 7 sheets in PDB entry 5LC0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
1021 1027anti-parallel
Strand 3
A
1034 1042anti-parallel
Strand 4
A
1045 1049anti-parallel
Strand 5
A
1076 1079anti-parallel
Strand 6
A
1067 1071anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
1107 1111parallel
Strand 3
A
1095 1099anti-parallel
Strand 4
A
1138 1140anti-parallel
Strand 5
A
1146 1155anti-parallel
Strand 6
A
1161 1166anti-parallel
Strand 7
A
1123 1126anti-parallel
Strand 8
A
1114 1117anti-parallel
Strand 9
A
74 78parallel
Strand 10
A
84 86anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1058 1059first strand
Strand 2
A
1064 1065anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
1021 1029anti-parallel
Strand 3
B
1032 1042anti-parallel
Strand 4
B
1045 1048anti-parallel
Strand 5
B
1076 1079anti-parallel
Strand 6
B
1067 1071anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
1114 1117parallel
Strand 3
B
1122 1126anti-parallel
Strand 4
B
1161 1164anti-parallel
Strand 5
B
1153 1155anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
84 85anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1107 1111first strand
Strand 2
B
1095 1099anti-parallel
Strand 3
B
1138 1140anti-parallel
Strand 4
B
1146 1149anti-parallel
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