Analysis of interatomic Contacts of Structural Units in PDB entry:
5LC1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LC1 entry

There are 6 chains in PDB entry 5LC1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 2	LEU 321
B	HIS 1	LEU 321
C	MET 2	LEU 321
D	MET 2	LEU 321
E	MET 2	LEU 321
F	HIS 1	PRO 319

There are 78 helices in PDB entry 5LC1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	27	Right-handed alpha
Helix 2	AA2	A	58	70	Right-handed alpha
Helix 3	AA3	A	81	88	Right-handed alpha
Helix 4	AA4	A	88	111	Right-handed alpha
Helix 5	AA5	A	121	123	Right-handed 310
Helix 6	AA6	A	142	163	Right-handed alpha
Helix 7	AA7	A	187	199	Right-handed alpha
Helix 8	AA8	A	217	230	Right-handed alpha
Helix 9	AA9	A	231	235	Right-handed 310
Helix 10	AB1	A	248	261	Right-handed alpha
Helix 11	AB2	A	271	279	Right-handed alpha
Helix 12	AB3	A	286	294	Right-handed alpha
Helix 13	AB4	A	300	317	Right-handed alpha
Helix 14	AB5	B	12	27	Right-handed alpha
Helix 15	AB6	B	58	70	Right-handed alpha
Helix 16	AB7	B	81	88	Right-handed alpha
Helix 17	AB8	B	88	111	Right-handed alpha
Helix 18	AB9	B	121	123	Right-handed 310
Helix 19	AC1	B	142	163	Right-handed alpha
Helix 20	AC2	B	187	198	Right-handed alpha
Helix 21	AC3	B	217	230	Right-handed alpha
Helix 22	AC4	B	231	235	Right-handed 310
Helix 23	AC5	B	248	261	Right-handed alpha
Helix 24	AC6	B	272	279	Right-handed alpha
Helix 25	AC7	B	286	294	Right-handed alpha
Helix 26	AC8	B	300	317	Right-handed alpha
Helix 27	AC9	C	12	27	Right-handed alpha
Helix 28	AD1	C	58	70	Right-handed alpha
Helix 29	AD2	C	81	88	Right-handed alpha
Helix 30	AD3	C	88	111	Right-handed alpha
Helix 31	AD4	C	121	123	Right-handed 310
Helix 32	AD5	C	142	163	Right-handed alpha
Helix 33	AD6	C	187	198	Right-handed alpha
Helix 34	AD7	C	217	230	Right-handed alpha
Helix 35	AD8	C	231	235	Right-handed 310
Helix 36	AD9	C	248	261	Right-handed alpha
Helix 37	AE1	C	272	279	Right-handed alpha
Helix 38	AE2	C	286	294	Right-handed alpha
Helix 39	AE3	C	300	317	Right-handed alpha
Helix 40	AE4	D	12	27	Right-handed alpha
Helix 41	AE5	D	58	70	Right-handed alpha
Helix 42	AE6	D	81	88	Right-handed alpha
Helix 43	AE7	D	88	110	Right-handed alpha
Helix 44	AE8	D	121	123	Right-handed 310
Helix 45	AE9	D	142	163	Right-handed alpha
Helix 46	AF1	D	187	199	Right-handed alpha
Helix 47	AF2	D	217	230	Right-handed alpha
Helix 48	AF3	D	231	235	Right-handed 310
Helix 49	AF4	D	248	261	Right-handed alpha
Helix 50	AF5	D	272	279	Right-handed alpha
Helix 51	AF6	D	286	294	Right-handed alpha
Helix 52	AF7	D	300	317	Right-handed alpha
Helix 53	AF8	E	12	27	Right-handed alpha
Helix 54	AF9	E	58	70	Right-handed alpha
Helix 55	AG1	E	81	88	Right-handed alpha
Helix 56	AG2	E	88	111	Right-handed alpha
Helix 57	AG3	E	121	123	Right-handed 310
Helix 58	AG4	E	142	163	Right-handed alpha
Helix 59	AG5	E	187	198	Right-handed alpha
Helix 60	AG6	E	217	230	Right-handed alpha
Helix 61	AG7	E	231	235	Right-handed 310
Helix 62	AG8	E	248	261	Right-handed alpha
Helix 63	AG9	E	271	279	Right-handed alpha
Helix 64	AH1	E	286	294	Right-handed alpha
Helix 65	AH2	E	300	317	Right-handed alpha
Helix 66	AH3	F	12	27	Right-handed alpha
Helix 67	AH4	F	58	70	Right-handed alpha
Helix 68	AH5	F	81	88	Right-handed alpha
Helix 69	AH6	F	88	110	Right-handed alpha
Helix 70	AH7	F	121	123	Right-handed 310
Helix 71	AH8	F	142	163	Right-handed alpha
Helix 72	AH9	F	187	198	Right-handed alpha
Helix 73	AI1	F	217	230	Right-handed alpha
Helix 74	AI2	F	231	235	Right-handed 310
Helix 75	AI3	F	248	261	Right-handed alpha
Helix 76	AI4	F	272	279	Right-handed alpha
Helix 77	AI5	F	286	294	Right-handed alpha
Helix 78	AI6	F	300	317	Right-handed alpha

There are 24 sheets in PDB entry 5LC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	31	35	parallel
Strand 3	A	5	8	parallel
Strand 4	A	73	76	parallel
Strand 5	A	113	115	parallel
Strand 6	A	166	171	parallel
Strand 7	A	118	119	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	31	35	parallel
Strand 3	A	5	8	parallel
Strand 4	A	73	76	parallel
Strand 5	A	113	115	parallel
Strand 6	A	166	171	parallel
Strand 7	A	239	241	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	212	216	parallel
Strand 3	A	245	247	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	266	268	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	31	35	parallel
Strand 3	B	5	8	parallel
Strand 4	B	73	76	parallel
Strand 5	B	113	115	parallel
Strand 6	B	166	171	parallel
Strand 7	B	118	119	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	31	35	parallel
Strand 3	B	5	8	parallel
Strand 4	B	73	76	parallel
Strand 5	B	113	115	parallel
Strand 6	B	166	171	parallel
Strand 7	B	239	241	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	212	216	parallel
Strand 3	B	245	247	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	266	268	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	53	first strand
Strand 2	C	31	35	parallel
Strand 3	C	5	8	parallel
Strand 4	C	73	76	parallel
Strand 5	C	113	115	parallel
Strand 6	C	166	171	parallel
Strand 7	C	118	119	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	53	first strand
Strand 2	C	31	35	parallel
Strand 3	C	5	8	parallel
Strand 4	C	73	76	parallel
Strand 5	C	113	115	parallel
Strand 6	C	166	171	parallel
Strand 7	C	239	241	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	212	216	parallel
Strand 3	C	245	247	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	204	first strand
Strand 2	C	266	268	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	53	first strand
Strand 2	D	31	35	parallel
Strand 3	D	5	8	parallel
Strand 4	D	73	76	parallel
Strand 5	D	113	115	parallel
Strand 6	D	166	171	parallel
Strand 7	D	118	119	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	53	first strand
Strand 2	D	31	35	parallel
Strand 3	D	5	8	parallel
Strand 4	D	73	76	parallel
Strand 5	D	113	115	parallel
Strand 6	D	166	171	parallel
Strand 7	D	239	241	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	175	first strand
Strand 2	D	212	216	parallel
Strand 3	D	245	247	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	204	first strand
Strand 2	D	266	268	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	53	first strand
Strand 2	E	31	35	parallel
Strand 3	E	5	8	parallel
Strand 4	E	73	76	parallel
Strand 5	E	113	115	parallel
Strand 6	E	166	171	parallel
Strand 7	E	118	119	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	53	first strand
Strand 2	E	31	35	parallel
Strand 3	E	5	8	parallel
Strand 4	E	73	76	parallel
Strand 5	E	113	115	parallel
Strand 6	E	166	171	parallel
Strand 7	E	239	241	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	175	first strand
Strand 2	E	212	216	parallel
Strand 3	E	245	247	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	204	first strand
Strand 2	E	266	268	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	53	first strand
Strand 2	F	31	35	parallel
Strand 3	F	5	8	parallel
Strand 4	F	73	76	parallel
Strand 5	F	113	115	parallel
Strand 6	F	166	171	parallel
Strand 7	F	118	119	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	53	first strand
Strand 2	F	31	35	parallel
Strand 3	F	5	8	parallel
Strand 4	F	73	76	parallel
Strand 5	F	113	115	parallel
Strand 6	F	166	171	parallel
Strand 7	F	239	241	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	173	175	first strand
Strand 2	F	212	216	parallel
Strand 3	F	245	247	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	204	first strand
Strand 2	F	266	268	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LC1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LC1