Analysis of interatomic Contacts of Structural Units in PDB entry:
5LC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LC8 entry

There is 1 chain in PDB entry 5LC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22ILE 685
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5LC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 24Right-handed 310
Helix 2
AA2
A
25 30Right-handed alpha
Helix 3
AA3
A
32 48Right-handed alpha
Helix 4
AA4
A
54 58Right-handed 310
Helix 5
AA5
A
59 77Right-handed alpha
Helix 6
AA6
A
96 100Right-handed 310
Helix 7
AA7
A
102 124Right-handed alpha
Helix 8
AA8
A
125 130Right-handed alpha
Helix 9
AA9
A
132 160Right-handed alpha
Helix 10
AB1
A
163 195Right-handed alpha
Helix 11
AB2
A
209 215Right-handed alpha
Helix 12
AB3
A
223 228Right-handed alpha
Helix 13
AB4
A
230 241Right-handed alpha
Helix 14
AB5
A
260 269Right-handed alpha
Helix 15
AB6
A
273 280Right-handed alpha
Helix 16
AB7
A
289 295Right-handed 310
Helix 17
AB8
A
350 375Right-handed alpha
Helix 18
AB9
A
381 396Right-handed alpha
Helix 19
AC1
A
400 407Right-handed alpha
Helix 20
AC2
A
408 411Right-handed 310
Helix 21
AC3
A
412 424Right-handed alpha
Helix 22
AC4
A
429 435Right-handed alpha
Helix 23
AC5
A
438 453Right-handed alpha
Helix 24
AC6
A
459 467Right-handed alpha
Helix 25
AC7
A
478 503Right-handed alpha
Helix 26
AC8
A
505 511Right-handed alpha
Helix 27
AC9
A
512 525Right-handed alpha
Helix 28
AD1
A
536 552Right-handed alpha
Helix 29
AD2
A
552 560Right-handed alpha
Helix 30
AD3
A
561 566Right-handed alpha
Helix 31
AD4
A
588 594Right-handed alpha
Helix 32
AD5
A
598 613Right-handed alpha
Helix 33
AD6
A
636 641Right-handed alpha
Helix 34
AD7
A
644 667Right-handed alpha
Helix 35
AD8
A
675 679Right-handed 310
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There are 3 sheets in PDB entry 5LC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
91 92anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
283 287anti-parallel
Strand 3
A
314 319anti-parallel
Strand 4
A
326 332anti-parallel
Strand 5
A
342 344anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
306 308anti-parallel
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