Analysis of interatomic Contacts of Structural Units in PDB entry:
5LC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LC9 entry

There are 4 chains in PDB entry 5LC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 256
B
 MET 1GLU 258
C
 MET 1GLN 256
D
 MET 1PRO 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 5LC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
13 17Right-handed 310
Helix 3
AA3
A
28 54Right-handed alpha
Helix 4
AA4
A
69 78Right-handed alpha
Helix 5
AA5
A
95 100Right-handed alpha
Helix 6
AA6
A
104 109Right-handed alpha
Helix 7
AA7
A
123 128Right-handed 310
Helix 8
AA8
A
129 134Right-handed alpha
Helix 9
AA9
A
138 143Right-handed alpha
Helix 10
AB1
A
144 159Right-handed alpha
Helix 11
AB2
A
171 185Right-handed alpha
Helix 12
AB3
A
188 193Right-handed 310
Helix 13
AB4
A
194 202Right-handed alpha
Helix 14
AB5
A
202 218Right-handed alpha
Helix 15
AB6
A
231 249Right-handed alpha
Helix 16
AB7
B
1 5Right-handed 310
Helix 17
AB8
B
13 17Right-handed 310
Helix 18
AB9
B
28 54Right-handed alpha
Helix 19
AC1
B
69 78Right-handed alpha
Helix 20
AC2
B
95 100Right-handed alpha
Helix 21
AC3
B
104 109Right-handed alpha
Helix 22
AC4
B
123 128Right-handed 310
Helix 23
AC5
B
129 134Right-handed alpha
Helix 24
AC6
B
138 144Right-handed alpha
Helix 25
AC7
B
144 159Right-handed alpha
Helix 26
AC8
B
171 185Right-handed alpha
Helix 27
AC9
B
188 193Right-handed 310
Helix 28
AD1
B
194 202Right-handed alpha
Helix 29
AD2
B
202 218Right-handed alpha
Helix 30
AD3
B
231 250Right-handed alpha
Helix 31
AD4
C
13 17Right-handed 310
Helix 32
AD5
C
27 54Right-handed alpha
Helix 33
AD6
C
69 78Right-handed alpha
Helix 34
AD7
C
95 100Right-handed alpha
Helix 35
AD8
C
104 109Right-handed alpha
Helix 36
AD9
C
123 128Right-handed 310
Helix 37
AE1
C
129 134Right-handed alpha
Helix 38
AE2
C
138 144Right-handed alpha
Helix 39
AE3
C
144 159Right-handed alpha
Helix 40
AE4
C
171 185Right-handed alpha
Helix 41
AE5
C
188 192Right-handed 310
Helix 42
AE6
C
193 194Right-handed 310
Helix 43
AE7
C
195 202Right-handed alpha
Helix 44
AE8
C
202 218Right-handed alpha
Helix 45
AE9
C
231 249Right-handed alpha
Helix 46
AF1
D
13 17Right-handed 310
Helix 47
AF2
D
28 54Right-handed alpha
Helix 48
AF3
D
69 78Right-handed alpha
Helix 49
AF4
D
95 100Right-handed alpha
Helix 50
AF5
D
104 109Right-handed alpha
Helix 51
AF6
D
123 128Right-handed 310
Helix 52
AF7
D
129 134Right-handed alpha
Helix 53
AF8
D
138 143Right-handed alpha
Helix 54
AF9
D
144 159Right-handed alpha
Helix 55
AG1
D
171 185Right-handed alpha
Helix 56
AG2
D
188 193Right-handed 310
Helix 57
AG3
D
194 202Right-handed alpha
Helix 58
AG4
D
202 218Right-handed alpha
Helix 59
AG5
D
231 250Right-handed alpha
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There are 4 sheets in PDB entry 5LC9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
117 121parallel
Strand 3
A
57 64parallel
Strand 4
A
161 169parallel
Strand 5
A
224 228parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
117 121parallel
Strand 3
B
57 64parallel
Strand 4
B
161 169parallel
Strand 5
B
224 228parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 90first strand
Strand 2
C
117 121parallel
Strand 3
C
57 64parallel
Strand 4
C
161 169parallel
Strand 5
C
224 228parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 90first strand
Strand 2
D
117 121parallel
Strand 3
D
57 64parallel
Strand 4
D
161 169parallel
Strand 5
D
224 228parallel
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