Analysis of interatomic Contacts of Structural Units in PDB entry:
5LCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LCD entry

There are 4 chains in PDB entry 5LCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 256
B
 MET 1GLU 258
C
 MET 1GLN 256
D
 MET 1GLU 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 5LCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
13 17Right-handed 310
Helix 3
AA3
A
28 54Right-handed alpha
Helix 4
AA4
A
69 78Right-handed alpha
Helix 5
AA5
A
95 100Right-handed alpha
Helix 6
AA6
A
104 110Right-handed alpha
Helix 7
AA7
A
123 128Right-handed 310
Helix 8
AA8
A
129 134Right-handed alpha
Helix 9
AA9
A
138 144Right-handed alpha
Helix 10
AB1
A
144 159Right-handed alpha
Helix 11
AB2
A
171 185Right-handed alpha
Helix 12
AB3
A
195 202Right-handed alpha
Helix 13
AB4
A
202 218Right-handed alpha
Helix 14
AB5
A
231 250Right-handed alpha
Helix 15
AB6
B
13 17Right-handed 310
Helix 16
AB7
B
28 54Right-handed alpha
Helix 17
AB8
B
69 78Right-handed alpha
Helix 18
AB9
B
95 100Right-handed alpha
Helix 19
AC1
B
104 109Right-handed alpha
Helix 20
AC2
B
123 128Right-handed 310
Helix 21
AC3
B
129 134Right-handed alpha
Helix 22
AC4
B
138 143Right-handed alpha
Helix 23
AC5
B
144 159Right-handed alpha
Helix 24
AC6
B
171 185Right-handed alpha
Helix 25
AC7
B
188 192Right-handed 310
Helix 26
AC8
B
193 194Right-handed 310
Helix 27
AC9
B
195 202Right-handed alpha
Helix 28
AD1
B
202 218Right-handed alpha
Helix 29
AD2
B
231 250Right-handed alpha
Helix 30
AD3
C
13 17Right-handed 310
Helix 31
AD4
C
28 54Right-handed alpha
Helix 32
AD5
C
69 78Right-handed alpha
Helix 33
AD6
C
95 100Right-handed alpha
Helix 34
AD7
C
104 109Right-handed alpha
Helix 35
AD8
C
123 128Right-handed 310
Helix 36
AD9
C
129 134Right-handed alpha
Helix 37
AE1
C
138 144Right-handed alpha
Helix 38
AE2
C
144 159Right-handed alpha
Helix 39
AE3
C
171 185Right-handed alpha
Helix 40
AE4
C
188 192Right-handed 310
Helix 41
AE5
C
193 196Right-handed 310
Helix 42
AE6
C
197 202Right-handed alpha
Helix 43
AE7
C
202 218Right-handed alpha
Helix 44
AE8
C
231 249Right-handed alpha
Helix 45
AE9
D
13 17Right-handed 310
Helix 46
AF1
D
27 54Right-handed alpha
Helix 47
AF2
D
69 78Right-handed alpha
Helix 48
AF3
D
95 100Right-handed alpha
Helix 49
AF4
D
104 110Right-handed alpha
Helix 50
AF5
D
123 128Right-handed 310
Helix 51
AF6
D
129 134Right-handed alpha
Helix 52
AF7
D
138 143Right-handed alpha
Helix 53
AF8
D
144 159Right-handed alpha
Helix 54
AF9
D
171 185Right-handed alpha
Helix 55
AG1
D
195 202Right-handed alpha
Helix 56
AG2
D
202 218Right-handed alpha
Helix 57
AG3
D
231 250Right-handed alpha
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There are 4 sheets in PDB entry 5LCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
117 121parallel
Strand 3
A
57 64parallel
Strand 4
A
161 169parallel
Strand 5
A
224 228parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
117 121parallel
Strand 3
B
57 64parallel
Strand 4
B
161 169parallel
Strand 5
B
224 228parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 90first strand
Strand 2
C
117 121parallel
Strand 3
C
57 64parallel
Strand 4
C
161 169parallel
Strand 5
C
224 228parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 90first strand
Strand 2
D
117 121parallel
Strand 3
D
57 64parallel
Strand 4
D
161 169parallel
Strand 5
D
224 228parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il