Analysis of interatomic Contacts of Structural Units in PDB entry:
5LCN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LCN entry

There are 4 chains in PDB entry 5LCN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 21GLY 288
B
 GLY 21GLY 288
C
 HIS 20GLY 288
D
 HIS 19GLY 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5LCN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 40Right-handed 310
Helix 2
AA2
A
84 96Right-handed alpha
Helix 3
AA3
A
120 136Right-handed alpha
Helix 4
AA4
A
149 162Right-handed alpha
Helix 5
AA5
A
176 185Right-handed alpha
Helix 6
AA6
A
186 189Right-handed 310
Helix 7
AA7
A
192 197Right-handed alpha
Helix 8
AA8
A
199 208Right-handed alpha
Helix 9
AA9
A
213 218Right-handed 310
Helix 10
AB1
A
237 249Right-handed alpha
Helix 11
AB2
A
266 271Right-handed alpha
Helix 12
AB3
A
271 287Right-handed alpha
Helix 13
AB4
B
35 40Right-handed 310
Helix 14
AB5
B
84 96Right-handed alpha
Helix 15
AB6
B
120 136Right-handed alpha
Helix 16
AB7
B
137 140Right-handed 310
Helix 17
AB8
B
149 162Right-handed alpha
Helix 18
AB9
B
176 189Right-handed alpha
Helix 19
AC1
B
192 200Right-handed alpha
Helix 20
AC2
B
201 203Right-handed 310
Helix 21
AC3
B
214 219Right-handed 310
Helix 22
AC4
B
237 249Right-handed alpha
Helix 23
AC5
B
266 271Right-handed alpha
Helix 24
AC6
B
271 287Right-handed alpha
Helix 25
AC7
C
35 40Right-handed 310
Helix 26
AC8
C
84 96Right-handed alpha
Helix 27
AC9
C
120 136Right-handed alpha
Helix 28
AD1
C
137 141Right-handed 310
Helix 29
AD2
C
149 162Right-handed alpha
Helix 30
AD3
C
176 189Right-handed alpha
Helix 31
AD4
C
192 206Right-handed alpha
Helix 32
AD5
C
213 215Right-handed 310
Helix 33
AD6
C
216 221Right-handed alpha
Helix 34
AD7
C
237 249Right-handed alpha
Helix 35
AD8
C
266 271Right-handed alpha
Helix 36
AD9
C
271 287Right-handed alpha
Helix 37
AE1
D
35 40Right-handed 310
Helix 38
AE2
D
84 95Right-handed alpha
Helix 39
AE3
D
120 136Right-handed alpha
Helix 40
AE4
D
137 140Right-handed 310
Helix 41
AE5
D
149 162Right-handed alpha
Helix 42
AE6
D
176 189Right-handed alpha
Helix 43
AE7
D
192 206Right-handed alpha
Helix 44
AE8
D
214 219Right-handed 310
Helix 45
AE9
D
237 247Right-handed alpha
Helix 46
AF1
D
266 271Right-handed alpha
Helix 47
AF2
D
273 288Right-handed alpha
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There are 8 sheets in PDB entry 5LCN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
C
29 32anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
C
22 25anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
55 61anti-parallel
Strand 3
A
98 102anti-parallel
Strand 4
A
67 72parallel
Strand 5
A
142 148parallel
Strand 6
A
165 171parallel
Strand 7
A
225 230parallel
Strand 8
A
255 260parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
D
29 32anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
D
24 25anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
55 61anti-parallel
Strand 3
B
98 102anti-parallel
Strand 4
B
67 72parallel
Strand 5
B
142 148parallel
Strand 6
B
167 171parallel
Strand 7
B
225 230parallel
Strand 8
B
255 260parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 49first strand
Strand 2
C
55 61anti-parallel
Strand 3
C
98 102anti-parallel
Strand 4
C
67 72parallel
Strand 5
C
142 148parallel
Strand 6
C
165 171parallel
Strand 7
C
225 230parallel
Strand 8
C
255 260parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 49first strand
Strand 2
D
55 61anti-parallel
Strand 3
D
98 102anti-parallel
Strand 4
D
67 72parallel
Strand 5
D
142 148parallel
Strand 6
D
167 171parallel
Strand 7
D
225 230parallel
Strand 8
D
255 260parallel
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