Analysis of interatomic Contacts of Structural Units in PDB entry:
5LCX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LCX entry

There is 1 chain in PDB entry 5LCX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5TYR 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5LCX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
38 54Right-handed alpha
Helix 3
AA3
A
56 58Right-handed 310
Helix 4
AA4
A
69 84Right-handed alpha
Helix 5
AA5
A
105 124Right-handed alpha
Helix 6
AA6
A
143 155Right-handed alpha
Helix 7
AA7
A
155 170Right-handed alpha
Helix 8
AA8
A
182 190Right-handed 310
Helix 9
AA9
A
192 201Right-handed alpha
Helix 10
AB1
A
202 205Right-handed 310
Helix 11
AB2
A
206 224Right-handed alpha
Helix 12
AB3
A
225 229Right-handed 310
Helix 13
AB4
A
235 256Right-handed alpha
Helix 14
AB5
A
271 275Right-handed 310
Helix 15
AB6
A
281 294Right-handed alpha
Helix 16
AB7
A
306 312Right-handed alpha
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There are 2 sheets in PDB entry 5LCX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
31 36parallel
Strand 3
A
7 10parallel
Strand 4
A
89 92parallel
Strand 5
A
176 180parallel
Strand 6
A
260 264parallel
Strand 7
A
304 305parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
138 141anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il