Analysis of interatomic Contacts of Structural Units in PDB entry:
5LD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LD8 entry

There are 2 chains in PDB entry 5LD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4TYR 416
B
 PRO 4TYR 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5LD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 39Right-handed alpha
Helix 2
AA2
A
48 55Right-handed alpha
Helix 3
AA3
A
67 72Right-handed 310
Helix 4
AA4
A
73 80Right-handed alpha
Helix 5
AA5
A
81 98Right-handed alpha
Helix 6
AA6
A
104 106Right-handed 310
Helix 7
AA7
A
118 133Right-handed alpha
Helix 8
AA8
A
134 137Right-handed 310
Helix 9
AA9
A
140 146Right-handed alpha
Helix 10
AB1
A
148 159Right-handed alpha
Helix 11
AB2
A
169 171Right-handed 310
Helix 12
AB3
A
172 187Right-handed alpha
Helix 13
AB4
A
203 212Right-handed alpha
Helix 14
AB5
A
222 226Right-handed 310
Helix 15
AB6
A
251 257Right-handed alpha
Helix 16
AB7
A
284 299Right-handed alpha
Helix 17
AB8
A
301 305Right-handed 310
Helix 18
AB9
A
315 329Right-handed alpha
Helix 19
AC1
A
339 344Right-handed alpha
Helix 20
AC2
A
346 348Right-handed 310
Helix 21
AC3
A
349 365Right-handed alpha
Helix 22
AC4
B
28 38Right-handed alpha
Helix 23
AC5
B
48 55Right-handed alpha
Helix 24
AC6
B
67 72Right-handed 310
Helix 25
AC7
B
73 80Right-handed alpha
Helix 26
AC8
B
81 98Right-handed alpha
Helix 27
AC9
B
104 106Right-handed 310
Helix 28
AD1
B
118 133Right-handed alpha
Helix 29
AD2
B
134 137Right-handed 310
Helix 30
AD3
B
140 146Right-handed alpha
Helix 31
AD4
B
148 159Right-handed alpha
Helix 32
AD5
B
169 171Right-handed 310
Helix 33
AD6
B
172 187Right-handed alpha
Helix 34
AD7
B
203 214Right-handed alpha
Helix 35
AD8
B
222 226Right-handed 310
Helix 36
AD9
B
251 257Right-handed alpha
Helix 37
AE1
B
284 299Right-handed alpha
Helix 38
AE2
B
301 303Right-handed 310
Helix 39
AE3
B
315 330Right-handed alpha
Helix 40
AE4
B
339 344Right-handed alpha
Helix 41
AE5
B
346 348Right-handed 310
Helix 42
AE6
B
349 365Right-handed alpha
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There are 6 sheets in PDB entry 5LD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
108 114parallel
Strand 3
A
192 198parallel
Strand 4
A
243 250anti-parallel
Strand 5
A
14 22anti-parallel
Strand 6
A
263 272anti-parallel
Strand 7
A
407 414anti-parallel
Strand 8
A
396 403anti-parallel
Strand 9
A
307 309parallel
Strand 10
A
335 337parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
60 61anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
390 391anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
108 113parallel
Strand 3
B
192 197parallel
Strand 4
B
243 250anti-parallel
Strand 5
B
14 22anti-parallel
Strand 6
B
263 272anti-parallel
Strand 7
B
407 414anti-parallel
Strand 8
B
396 403anti-parallel
Strand 9
B
305 309parallel
Strand 10
B
335 337parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
60 61anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 367first strand
Strand 2
B
390 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il