Analysis of interatomic Contacts of Structural Units in PDB entry:
5LDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LDE entry

There are 8 chains in PDB entry 5LDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2MET 271
B
 GLN 2LEU 273
R
 LEU 230HIS 235
R
 LEU 237GLN 239
R
 TYR 241CYS 249
S
 LEU 230HIS 235
S
 LEU 237GLN 239
S
 TYR 241CYS 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5LDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 38Right-handed alpha
Helix 2
AA2
A
67 103Right-handed alpha
Helix 3
AA3
A
103 113Right-handed alpha
Helix 4
AA4
A
115 126Right-handed alpha
Helix 5
AA5
A
134 148Right-handed alpha
Helix 6
AA6
A
152 164Right-handed alpha
Helix 7
AA7
A
165 172Right-handed alpha
Helix 8
AA8
A
176 184Right-handed alpha
Helix 9
AA9
A
192 205Right-handed alpha
Helix 10
AB1
A
206 218Right-handed alpha
Helix 11
AB2
A
219 221Right-handed 310
Helix 12
AB3
A
229 240Right-handed alpha
Helix 13
AB4
A
248 257Right-handed alpha
Helix 14
AB5
A
260 271Right-handed alpha
Helix 15
AB6
B
22 38Right-handed alpha
Helix 16
AB7
B
64 113Right-handed alpha
Helix 17
AB8
B
115 126Right-handed alpha
Helix 18
AB9
B
134 147Right-handed alpha
Helix 19
AC1
B
152 164Right-handed alpha
Helix 20
AC2
B
165 172Right-handed alpha
Helix 21
AC3
B
176 184Right-handed alpha
Helix 22
AC4
B
192 205Right-handed alpha
Helix 23
AC5
B
206 218Right-handed alpha
Helix 24
AC6
B
219 221Right-handed 310
Helix 25
AC7
B
229 240Right-handed alpha
Helix 26
AC8
B
248 257Right-handed alpha
Helix 27
AC9
B
260 272Right-handed alpha
Helix 28
AD1
R
231 247Right-handed alpha
Helix 29
AD2
S
231 249Right-handed alpha
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There are 3 sheets in PDB entry 5LDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
51 54parallel
Strand 3
A
44 46anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
57 58anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
3 6anti-parallel
Strand 3
B
51 53parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il