Analysis of interatomic Contacts of Structural Units in PDB entry:
5LDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LDV entry

There is 1 chain in PDB entry 5LDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PHE 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5LDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 10Right-handed alpha
Helix 2
AA2
A
100 102Right-handed 310
Helix 3
AA3
A
151 156Right-handed alpha
Helix 4
AA4
A
157 159Right-handed 310
Helix 5
AA5
A
244 249Right-handed alpha
Helix 6
AA6
A
296 300Right-handed 310
Helix 7
AA7
A
304 308Right-handed 310
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There are 2 sheets in PDB entry 5LDV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
198 209anti-parallel
Strand 3
A
213 224anti-parallel
Strand 4
A
231 243anti-parallel
Strand 5
A
256 267anti-parallel
Strand 6
A
270 286anti-parallel
Strand 7
A
316 331anti-parallel
Strand 8
A
335 347anti-parallel
Strand 9
A
357 369anti-parallel
Strand 10
A
374 385anti-parallel
Strand 11
A
395 408anti-parallel
Strand 12
A
13 28anti-parallel
Strand 13
A
42 58anti-parallel
Strand 14
A
61 73anti-parallel
Strand 15
A
89 99anti-parallel
Strand 16
A
104 112anti-parallel
Strand 17
A
126 134anti-parallel
Strand 18
A
140 150anti-parallel
Strand 19
A
184 191anti-parallel
Strand 20
A
198 209anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
170 174anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il