Analysis of interatomic Contacts of Structural Units in PDB entry:
5LEM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LEM entry

There are 2 chains in PDB entry 5LEM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 6ALA 325
B
 GLY 5PHE 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5LEM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
26 36Right-handed alpha
Helix 3
AA3
A
49 58Right-handed alpha
Helix 4
AA4
A
59 70Right-handed alpha
Helix 5
AA5
A
82 90Right-handed alpha
Helix 6
AA6
A
92 102Right-handed alpha
Helix 7
AA7
A
115 123Right-handed alpha
Helix 8
AA8
A
125 135Right-handed alpha
Helix 9
AA9
A
148 154Right-handed alpha
Helix 10
AB1
A
155 157Right-handed 310
Helix 11
AB2
A
158 182Right-handed alpha
Helix 12
AB3
A
183 193Right-handed alpha
Helix 13
AB4
A
206 214Right-handed alpha
Helix 14
AB5
A
216 226Right-handed alpha
Helix 15
AB6
A
239 248Right-handed alpha
Helix 16
AB7
A
249 259Right-handed alpha
Helix 17
AB8
A
272 280Right-handed alpha
Helix 18
AB9
A
282 292Right-handed alpha
Helix 19
AC1
A
305 313Right-handed alpha
Helix 20
AC2
A
315 325Right-handed alpha
Helix 21
AC3
B
16 32Right-handed alpha
Helix 22
AC4
B
42 54Right-handed alpha
Helix 23
AC5
B
64 73Right-handed alpha
Helix 24
AC6
B
82 87Right-handed alpha
Helix 25
AC7
B
88 89Right-handed 310
Helix 26
AC8
B
90 96Right-handed 310
Helix 27
AC9
B
128 130Right-handed 310
Helix 28
AD1
B
131 141Right-handed alpha
Helix 29
AD2
B
153 162Right-handed alpha
Helix 30
AD3
B
185 201Right-handed alpha
Helix 31
AD4
B
209 219Right-handed alpha
Helix 32
AD5
B
231 238Right-handed alpha
Helix 33
AD6
B
273 283Right-handed alpha
Helix 34
AD7
B
286 297Right-handed alpha
Helix 35
AD8
B
304 313Right-handed alpha
Helix 36
AD9
B
314 326Right-handed alpha
Helix 37
AE1
B
333 335Right-handed 310
Helix 38
AE2
B
336 352Right-handed alpha
Helix 39
AE3
B
356 368Right-handed alpha
Helix 40
AE4
C
2 7Right-handed alpha
Helix 41
AE5
C
56 61Right-handed alpha
Helix 42
AE6
C
68 72Right-handed 310
Helix 43
AE7
C
75 79Right-handed 310
Helix 44
AE8
C
82 87Right-handed alpha
Helix 45
AE9
C
156 159Right-handed 310
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There are 6 sheets in PDB entry 5LEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
34 38parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
260 265anti-parallel
Strand 3
B
105 111anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
102 103anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 227first strand
Strand 2
B
114 117anti-parallel
Strand 3
B
244 245anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 172first strand
Strand 2
B
175 182anti-parallel
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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 22first strand
Strand 2
C
25 36anti-parallel
Strand 3
C
41 48anti-parallel
Strand 4
C
217 227anti-parallel
Strand 5
C
199 208anti-parallel
Strand 6
C
151 154anti-parallel
Strand 7
C
161 170anti-parallel
Strand 8
C
176 187anti-parallel
Strand 9
C
92 100anti-parallel
Strand 10
C
105 115anti-parallel
Strand 11
C
118 128anti-parallel
Strand 12
C
11 22parallel
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