Analysis of interatomic Contacts of Structural Units in PDB entry:
5LF2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LF2 entry

There are 2 chains in PDB entry 5LF2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 523ALA 833
B
 PRO 524ALA 833
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5LF2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
575 577Right-handed 310
Helix 2
AA2
A
661 664Right-handed 310
Helix 3
AA3
A
727 729Right-handed 310
Helix 4
AA4
A
730 735Right-handed alpha
Helix 5
AA5
A
737 750Right-handed alpha
Helix 6
AA6
A
751 757Right-handed 310
Helix 7
AA7
A
767 781Right-handed alpha
Helix 8
AA8
B
575 577Right-handed 310
Helix 9
AA9
B
661 664Right-handed 310
Helix 10
AB1
B
727 729Right-handed 310
Helix 11
AB2
B
730 735Right-handed alpha
Helix 12
AB3
B
737 750Right-handed alpha
Helix 13
AB4
B
751 757Right-handed 310
Helix 14
AB5
B
767 781Right-handed alpha
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There are 12 sheets in PDB entry 5LF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 551first strand
Strand 2
A
557 558anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 563first strand
Strand 2
A
784 785anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 573first strand
Strand 2
A
716 725anti-parallel
Strand 3
A
622 631anti-parallel
Strand 4
A
677 679anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
601 605anti-parallel
Strand 3
A
716 725anti-parallel
Strand 4
A
622 631anti-parallel
Strand 5
A
684 686anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 615first strand
Strand 2
A
692 702anti-parallel
Strand 3
A
638 646anti-parallel
Strand 4
A
666 671anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
811 812first strand
Strand 2
A
818 819anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 551first strand
Strand 2
B
557 558anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
562 563first strand
Strand 2
B
784 785anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
571 573first strand
Strand 2
B
716 725anti-parallel
Strand 3
B
622 631anti-parallel
Strand 4
B
677 679anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
584 586first strand
Strand 2
B
601 605anti-parallel
Strand 3
B
716 725anti-parallel
Strand 4
B
622 631anti-parallel
Strand 5
B
684 686anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
610 615first strand
Strand 2
B
692 702anti-parallel
Strand 3
B
638 646anti-parallel
Strand 4
B
666 671anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
811 812first strand
Strand 2
B
818 819anti-parallel
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