Analysis of interatomic Contacts of Structural Units in PDB entry:
5LF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LF9 entry

There is 1 chain in PDB entry 5LF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5LF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 19Right-handed 310
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
38 52Right-handed alpha
Helix 4
AA4
A
87 93Right-handed alpha
Helix 5
AA5
A
98 111Right-handed alpha
Helix 6
AA6
A
174 196Right-handed alpha
Helix 7
AA7
A
198 202Right-handed 310
Helix 8
AA8
A
215 217Right-handed 310
Helix 9
AA9
A
231 242Right-handed alpha
Helix 10
AB1
A
243 247Right-handed 310
Helix 11
AB2
A
257 261Right-handed alpha
Helix 12
AB3
A
262 266Right-handed 310
Helix 13
AB4
A
268 272Right-handed 310
Helix 14
AB5
A
273 287Right-handed alpha
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There are 3 sheets in PDB entry 5LF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
206 213anti-parallel
Strand 3
A
220 227anti-parallel
Strand 4
A
122 128parallel
Strand 5
A
154 155anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
78 86parallel
Strand 3
A
59 68anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
133 138anti-parallel
Strand 3
A
251 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il